Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10017127 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6172 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (84.21%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F049582 | Metagenome / Metatranscriptome | 146 | Y |
F053831 | Metagenome / Metatranscriptome | 140 | N |
F060634 | Metagenome | 132 | N |
F062703 | Metagenome / Metatranscriptome | 130 | N |
F063331 | Metagenome / Metatranscriptome | 129 | Y |
F074452 | Metagenome / Metatranscriptome | 119 | N |
F074804 | Metagenome / Metatranscriptome | 119 | Y |
F080943 | Metagenome / Metatranscriptome | 114 | N |
F083781 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_100171271 | F083781 | GGAGG | MKHINIEKFQKEAIDLAKTSNGNNPSFTGGSLYAEMIDADHAELLRADLEDFTNANWGDGDKNSPHGTAVKMYKLAEQNGRTEFVYDFVPGPGVVDDDLPPEVDMMLCLEAEIARGK |
Ga0214917_1001712710 | F062703 | GGAGG | MLKRKIIDNNSKTGMMVGYIHHSGDVTAIEPGWNMTPVVLAKLLKDLYPNKQDAIQLVDSAVLVPVFRKEDYQYVDGFGGVLESNINFYEENQRNHVGHLFLFMKGAWQYSNNGVDWDPISEVFIDGSGFQFSEVRQAVEAA |
Ga0214917_1001712711 | F063331 | AGGAG | MTDIDNFALLNDLKELLRQVDLGDTEQVRNELQDIIDRVQADCDERHRIYLERVERYMGHVDSALKDKKQG |
Ga0214917_1001712712 | F053831 | AGAAG | MSNWLKLNYSGDQFKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWIDRTEKEIQDGYKYWVILRARVFLAGIEIGSHSLGGLLFDNTDQMESMMQSDFEDIIEEAVSVARHNLKQMADAMQERVTA |
Ga0214917_1001712716 | F074804 | GGAGG | MIDERLSDQRDEFFLDIQKGDLVFLQADDGSEISGIAVERSIMGWMLEGGVEVTEYDNYLGHISRDRLTGLAA |
Ga0214917_1001712718 | F049582 | GGAGG | MFDKTKIHQELKNRFRNESDLTVSMMNRAISDLDISNPEALDVIYEDVMFFTGDWPETEGWGSSDTSALIRSVEETLISNGYLKAVA |
Ga0214917_100171272 | F080943 | AGGAG | MITEATKERLRELEGQKITLEDELERLSYTNNFARIAHLEQELYDIKDSIKKITQNHWFEDISSEELQKESRILQ |
Ga0214917_100171273 | F074452 | GAG | MPTKKNKINMTRLGIDPFTRAEILETQRAQDYWEMSYVDESNRVRYRMSRVLVEEEILDLLYCHGYITANQQAATINQTRRTDDNRGN |
Ga0214917_100171278 | F060634 | N/A | MIDFIVGFFAVIFFLAFYAYIGYWFLDLKALPAEHWVSRAADRVGSFFGGIWAPMRWKTRRLDIRLLLVIDNLVMRLTNIDFVLLSKRLWAHLVCLYLKMALFVLKLKRLFFERNENKR |
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