NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10017127

Scaffold Ga0214917_10017127


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10017127 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6172
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049582Metagenome / Metatranscriptome146Y
F053831Metagenome / Metatranscriptome140N
F060634Metagenome132N
F062703Metagenome / Metatranscriptome130N
F063331Metagenome / Metatranscriptome129Y
F074452Metagenome / Metatranscriptome119N
F074804Metagenome / Metatranscriptome119Y
F080943Metagenome / Metatranscriptome114N
F083781Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100171271F083781GGAGGMKHINIEKFQKEAIDLAKTSNGNNPSFTGGSLYAEMIDADHAELLRADLEDFTNANWGDGDKNSPHGTAVKMYKLAEQNGRTEFVYDFVPGPGVVDDDLPPEVDMMLCLEAEIARGK
Ga0214917_1001712710F062703GGAGGMLKRKIIDNNSKTGMMVGYIHHSGDVTAIEPGWNMTPVVLAKLLKDLYPNKQDAIQLVDSAVLVPVFRKEDYQYVDGFGGVLESNINFYEENQRNHVGHLFLFMKGAWQYSNNGVDWDPISEVFIDGSGFQFSEVRQAVEAA
Ga0214917_1001712711F063331AGGAGMTDIDNFALLNDLKELLRQVDLGDTEQVRNELQDIIDRVQADCDERHRIYLERVERYMGHVDSALKDKKQG
Ga0214917_1001712712F053831AGAAGMSNWLKLNYSGDQFKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWIDRTEKEIQDGYKYWVILRARVFLAGIEIGSHSLGGLLFDNTDQMESMMQSDFEDIIEEAVSVARHNLKQMADAMQERVTA
Ga0214917_1001712716F074804GGAGGMIDERLSDQRDEFFLDIQKGDLVFLQADDGSEISGIAVERSIMGWMLEGGVEVTEYDNYLGHISRDRLTGLAA
Ga0214917_1001712718F049582GGAGGMFDKTKIHQELKNRFRNESDLTVSMMNRAISDLDISNPEALDVIYEDVMFFTGDWPETEGWGSSDTSALIRSVEETLISNGYLKAVA
Ga0214917_100171272F080943AGGAGMITEATKERLRELEGQKITLEDELERLSYTNNFARIAHLEQELYDIKDSIKKITQNHWFEDISSEELQKESRILQ
Ga0214917_100171273F074452GAGMPTKKNKINMTRLGIDPFTRAEILETQRAQDYWEMSYVDESNRVRYRMSRVLVEEEILDLLYCHGYITANQQAATINQTRRTDDNRGN
Ga0214917_100171278F060634N/AMIDFIVGFFAVIFFLAFYAYIGYWFLDLKALPAEHWVSRAADRVGSFFGGIWAPMRWKTRRLDIRLLLVIDNLVMRLTNIDFVLLSKRLWAHLVCLYLKMALFVLKLKRLFFERNENKR

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