NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10015037

Scaffold Ga0214917_10015037


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10015037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6748
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (37.50%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F032548Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F044916Metagenome / Metatranscriptome153Y
F048123Metagenome / Metatranscriptome148Y
F049419Metagenome / Metatranscriptome146Y
F062447Metagenome / Metatranscriptome130N
F064403Metagenome / Metatranscriptome128N
F078229Metagenome / Metatranscriptome116Y
F104482Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001503710F032548N/AMKHNQEMEKAIKILEELVNQADEDCPHDCRTMHFVNALEEASEFIMEYKNTK
Ga0214917_1001503715F030670N/AMKVIRYIKQLEDEFGNDLELWGAYEETHKDNYPNVDFVDAKLLKTFPSPYHARNWMENDGKRIN
Ga0214917_1001503716F078229N/AMSDIKYTYYVEQDKDKDGNYIQSFSVYKTPVVKTIRVKTFKKLSDANNFLEKYESN
Ga0214917_1001503717F034827N/AMKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSNKKRNTINDPDEQQGNRVYKLNAKINIVII
Ga0214917_1001503718F048123GGAMKPRYDFTKGKLISYDGEIIEFAGSAIVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPTKLQKFKKKYGFSLTNKSNISKIAERMYNFRPF
Ga0214917_1001503719F104482N/AMTSEEFEKAMKAQGRLVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0214917_1001503721F032536AGAAGMSQKQTFEEIIQNFRFHKNPILNWTFSQSNYLYHTFLNTKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVPKEDDFEFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSEVGLEEVYEVYPQGFDPIKDRQMFLEKQEDGTYLVEFEKKENIQPDYSKLNKAYERQRNGLILLGLYFRDLWD
Ga0214917_1001503722F062447AGGAGMKHKIFWENNSRIKGIVPSEQIIKKTQTHNFPCEAVTIRMHDLNAKNPVAVAYFHGKESQHIGWGGQNHSFAETKLIVTFNKEKEEYGFNGAIRSFSLQDLKEVLDSVKEVLNKV
Ga0214917_1001503723F024040N/AMNVYVSGHNWLAKVDLEDSIRKNDRYAEATTRAIESVLDDEEKQGVELKIMDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEEYKFLRNYEENCKEQGL
Ga0214917_100150373F049419N/AMKFPKLNILDLVTTYIFFGLVYGTIITLTWNYLFEQTFNIHLSILQGFGIHLIARILFGNTNTNYISNFYSQKTPDLDKIDDYLKEIQADLDKEADEVEKQYEDLNKKD
Ga0214917_100150377F044916N/AMGKKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKTSLEILYKDNPNLFADHAKLKLKKK
Ga0214917_100150378F064403GGAMISPRSKILSDLKIAYLKEHPVSLVDRILGLLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF

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