Basic Information | |
---|---|
Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10015037 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6748 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (37.50%) |
Novel Protein Genes | 12 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
Associated Families | 12 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F024040 | Metagenome / Metatranscriptome | 207 | Y |
F030670 | Metagenome / Metatranscriptome | 184 | Y |
F032536 | Metagenome / Metatranscriptome | 179 | Y |
F032548 | Metagenome / Metatranscriptome | 179 | Y |
F034827 | Metagenome / Metatranscriptome | 173 | Y |
F044916 | Metagenome / Metatranscriptome | 153 | Y |
F048123 | Metagenome / Metatranscriptome | 148 | Y |
F049419 | Metagenome / Metatranscriptome | 146 | Y |
F062447 | Metagenome / Metatranscriptome | 130 | N |
F064403 | Metagenome / Metatranscriptome | 128 | N |
F078229 | Metagenome / Metatranscriptome | 116 | Y |
F104482 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214917_1001503710 | F032548 | N/A | MKHNQEMEKAIKILEELVNQADEDCPHDCRTMHFVNALEEASEFIMEYKNTK |
Ga0214917_1001503715 | F030670 | N/A | MKVIRYIKQLEDEFGNDLELWGAYEETHKDNYPNVDFVDAKLLKTFPSPYHARNWMENDGKRIN |
Ga0214917_1001503716 | F078229 | N/A | MSDIKYTYYVEQDKDKDGNYIQSFSVYKTPVVKTIRVKTFKKLSDANNFLEKYESN |
Ga0214917_1001503717 | F034827 | N/A | MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSNKKRNTINDPDEQQGNRVYKLNAKINIVII |
Ga0214917_1001503718 | F048123 | GGA | MKPRYDFTKGKLISYDGEIIEFAGSAIVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPTKLQKFKKKYGFSLTNKSNISKIAERMYNFRPF |
Ga0214917_1001503719 | F104482 | N/A | MTSEEFEKAMKAQGRLVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR |
Ga0214917_1001503721 | F032536 | AGAAG | MSQKQTFEEIIQNFRFHKNPILNWTFSQSNYLYHTFLNTKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVPKEDDFEFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSEVGLEEVYEVYPQGFDPIKDRQMFLEKQEDGTYLVEFEKKENIQPDYSKLNKAYERQRNGLILLGLYFRDLWD |
Ga0214917_1001503722 | F062447 | AGGAG | MKHKIFWENNSRIKGIVPSEQIIKKTQTHNFPCEAVTIRMHDLNAKNPVAVAYFHGKESQHIGWGGQNHSFAETKLIVTFNKEKEEYGFNGAIRSFSLQDLKEVLDSVKEVLNKV |
Ga0214917_1001503723 | F024040 | N/A | MNVYVSGHNWLAKVDLEDSIRKNDRYAEATTRAIESVLDDEEKQGVELKIMDYDDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEEYKFLRNYEENCKEQGL |
Ga0214917_100150373 | F049419 | N/A | MKFPKLNILDLVTTYIFFGLVYGTIITLTWNYLFEQTFNIHLSILQGFGIHLIARILFGNTNTNYISNFYSQKTPDLDKIDDYLKEIQADLDKEADEVEKQYEDLNKKD |
Ga0214917_100150377 | F044916 | N/A | MGKKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKTSLEILYKDNPNLFADHAKLKLKKK |
Ga0214917_100150378 | F064403 | GGA | MISPRSKILSDLKIAYLKEHPVSLVDRILGLLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF |
⦗Top⦘ |