Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10014241 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10014241 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7017
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7017

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F025725	Metagenome / Metatranscriptome	200	Y
F041730	Metagenome	159	Y
F044450	Metagenome / Metatranscriptome	154	N
F053995	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001424110	F024770	AGGAG	MAVSHARVSVGTTATKLTSDYDGKDGQTINVQNPAGGADVYLGGEGVTTTSYGFLLGAGISFSVELQDDEKLYAVVASSTQTVNILRQGT
Ga0214917_1001424111	F041730	AGG	MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIIPVVIQKTFDATGSFTVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAAAYVSVDAYQALLTRYNNSNNIRVIVVDADVKATDAATYATDASKAAGALQNYNTNQLMMMG
Ga0214917_100142414	F025725	N/A	MDGHYGFETKEKMMSASIIDDTIQVLTSMNLTVTKVTTPPGYAGIQVYLPNDTQAFFIWAKIDKDDFHFRMARFWQSENPFSMWIAPNLIQALAKTRVLTNQ
Ga0214917_100142418	F053995	AGGA	MSNPLRITKGEAAVGALQVGTNEMVYGIDFGTASVDPASINATTRGSVTFTLTGAATTDIIIVNPPSDLNDDLIFCGAAITAANTVSIYLYNPTASAINDTARTFSYVWIDTTE
Ga0214917_100142419	F044450	N/A	MYGLTQPNNMKAQILKSMIVNGRKLVAGDIVDVEGWRYIKSLSSNRYIKLIEDNASQETKQAEKPKVTKKTKEVAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10014241

Overview

Ecosystem & Geography

Associated Families

Sequences