Scaffold Ga0214917_10014203

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10014203
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7030
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F022857	Metagenome	212	Y
F044444	Metagenome / Metatranscriptome	154	Y
F053230	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1001420310	F022857	GAGG	MDPVIVPELTVSFAVDLELKYDSYQGRTPSDIAIALQDTLDDLLFETSPNVVGVYTTITAIDDNGND
Ga0214917_100142032	F044444	GGA	MTDDILEYARQLAMNTINLNSMGNYRSYDLELPEDTHWELVKLAADLKMHHEDYAQNILIAHVEQELDRKATG
Ga0214917_100142035	F053230	N/A	MFEAIFSAVLPIVKDILWTAAAALLAYVLNKLQVQLQNI
Ga0214917_100142036	F001018	N/A	MSQITQTKLQELSVLKLYEHYGALERSLPLLTPESQELAKAELEACANLRSEKIDRIYYAMAAHEDALARIKQEGELITQAKRHHESQLKQLKGLLNWLRRSAPLQTNKITGHNYEFVLVKKKDLTVEISSNLQDWDKEEQKTFCIQQEVTTTKQTVVRSIDGTVLEERTEPKTTTEILPSLDALRNAYQAGQHLPSGVKIFQEYSIRSKRIYNSNKSMDLEASEYFGNVLPEVGNSD