NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10012538

Scaffold Ga0214917_10012538


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10012538 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7678
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (29.63%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F027756Metagenome / Metatranscriptome193N
F030670Metagenome / Metatranscriptome184Y
F032548Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y
F049419Metagenome / Metatranscriptome146Y
F062446Metagenome / Metatranscriptome130Y
F064403Metagenome / Metatranscriptome128N
F078229Metagenome / Metatranscriptome116Y
F082109Metagenome / Metatranscriptome113Y
F096610Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001253812F096610N/AMANRPKTYFVKMTDNTNGTITISEAKVLDKVNQHARHWRSFDKRKLTSKLRSSDLVTS
Ga0214917_1001253814F049419N/AMKLPKLNLLDLATTYIFFGLVYGSIVTLTWNYLFEPITFVHLSFLQGFGIHLIARILFGNTNTNYISNFYSPKTPDLDKIDSYLKEIEADLNKEADEVERQYEDLDKKD
Ga0214917_1001253818F044916N/AMGKKKVDKSRIEKGLEKEEKTFALMSKKIVDAIKDEKSLRDFTRDCLEELYKDNPNLFADHAKIKLIKK
Ga0214917_1001253819F064403AGAAGGMINARAKILSDLKRAYLKEHPVSLVDRILGHLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF
Ga0214917_1001253820F036564GGAGMKMGRVCVDLNYIVDMDNDEMVRHATEALYEDLMQGIKYGDLANWIRVSEDKNATEDMIQEFLLEKEND
Ga0214917_1001253821F032548N/AMKHNQEMEKAIKLLEELVNQADEDCPQDCRTMHFVNALEEASEFIMEYKNKK
Ga0214917_1001253822F027756GAGMKLKDLIDRKILYINFPMNRHAIQEGKITEISPAEKCIKINNDWHLRENIRIIELFSEKERPALGFN
Ga0214917_1001253825F030670N/AMKVIRYIKELEDEFGEPLEKWAVYEEIQKPNYPHANFIDAKILKTFPSPYHARNWMENDGKNN
Ga0214917_1001253826F078229N/AMSKIKYTYYIEQDKDKDGNLVQAWSIYKTPLVKTIKVKTFKKLKDADAFLDNYESN
Ga0214917_1001253827F034827N/AMKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHSIYMKIRVPNTTSVNIIDLGDGKAYDFSAKKRNTINDPDEQQGNRVYKLNAKINIVVL
Ga0214917_100125384F062446AGGMTFKPIKVIAFTLIVLAWVLMTFFFVGCANTSYHTIPTAMSEDAQDYPTKYNMMDSQDGRRNPNAQVNIFGATY
Ga0214917_100125385F082109N/AMWTPIEIFLLTFLLNHFPMKTERLSVEEVIQNREAQLLVESLGLGNDF
Ga0214917_100125389F016774N/AMPPKNNKIIINKEQLDSLNHWRDQILKMEKSYYNKDLEKERTCRNMINKYLDDVLECNKNIKEKTKK

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