Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10012538 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7678 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (29.63%) |
Novel Protein Genes | 13 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
Associated Families | 13 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F016774 | Metagenome / Metatranscriptome | 244 | Y |
F027756 | Metagenome / Metatranscriptome | 193 | N |
F030670 | Metagenome / Metatranscriptome | 184 | Y |
F032548 | Metagenome / Metatranscriptome | 179 | Y |
F034827 | Metagenome / Metatranscriptome | 173 | Y |
F036564 | Metagenome / Metatranscriptome | 169 | N |
F044916 | Metagenome / Metatranscriptome | 153 | Y |
F049419 | Metagenome / Metatranscriptome | 146 | Y |
F062446 | Metagenome / Metatranscriptome | 130 | Y |
F064403 | Metagenome / Metatranscriptome | 128 | N |
F078229 | Metagenome / Metatranscriptome | 116 | Y |
F082109 | Metagenome / Metatranscriptome | 113 | Y |
F096610 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_1001253812 | F096610 | N/A | MANRPKTYFVKMTDNTNGTITISEAKVLDKVNQHARHWRSFDKRKLTSKLRSSDLVTS |
Ga0214917_1001253814 | F049419 | N/A | MKLPKLNLLDLATTYIFFGLVYGSIVTLTWNYLFEPITFVHLSFLQGFGIHLIARILFGNTNTNYISNFYSPKTPDLDKIDSYLKEIEADLNKEADEVERQYEDLDKKD |
Ga0214917_1001253818 | F044916 | N/A | MGKKKVDKSRIEKGLEKEEKTFALMSKKIVDAIKDEKSLRDFTRDCLEELYKDNPNLFADHAKIKLIKK |
Ga0214917_1001253819 | F064403 | AGAAGG | MINARAKILSDLKRAYLKEHPVSLVDRILGHLNNLTDFQLCQLYSEKYETNPKYMAEQFEFKF |
Ga0214917_1001253820 | F036564 | GGAG | MKMGRVCVDLNYIVDMDNDEMVRHATEALYEDLMQGIKYGDLANWIRVSEDKNATEDMIQEFLLEKEND |
Ga0214917_1001253821 | F032548 | N/A | MKHNQEMEKAIKLLEELVNQADEDCPQDCRTMHFVNALEEASEFIMEYKNKK |
Ga0214917_1001253822 | F027756 | GAG | MKLKDLIDRKILYINFPMNRHAIQEGKITEISPAEKCIKINNDWHLRENIRIIELFSEKERPALGFN |
Ga0214917_1001253825 | F030670 | N/A | MKVIRYIKELEDEFGEPLEKWAVYEEIQKPNYPHANFIDAKILKTFPSPYHARNWMENDGKNN |
Ga0214917_1001253826 | F078229 | N/A | MSKIKYTYYIEQDKDKDGNLVQAWSIYKTPLVKTIKVKTFKKLKDADAFLDNYESN |
Ga0214917_1001253827 | F034827 | N/A | MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHSIYMKIRVPNTTSVNIIDLGDGKAYDFSAKKRNTINDPDEQQGNRVYKLNAKINIVVL |
Ga0214917_100125384 | F062446 | AGG | MTFKPIKVIAFTLIVLAWVLMTFFFVGCANTSYHTIPTAMSEDAQDYPTKYNMMDSQDGRRNPNAQVNIFGATY |
Ga0214917_100125385 | F082109 | N/A | MWTPIEIFLLTFLLNHFPMKTERLSVEEVIQNREAQLLVESLGLGNDF |
Ga0214917_100125389 | F016774 | N/A | MPPKNNKIIINKEQLDSLNHWRDQILKMEKSYYNKDLEKERTCRNMINKYLDDVLECNKNIKEKTKK |
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