NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10012073

Scaffold Ga0214917_10012073


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10012073 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7886
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F002149Metagenome / Metatranscriptome589Y
F010449Metagenome / Metatranscriptome303N
F010603Metagenome / Metatranscriptome301Y
F012569Metagenome / Metatranscriptome279N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001207311F012569AGGAMSRALDKFQGQYGFSVGTQGTASAGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGKVIGYIAG
Ga0214917_1001207313F010603AGGAGMANEFVRSQRKAKGKAIRFDTQGLTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT
Ga0214917_100120732F002149N/AMTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGIVQDKDGIAGVALARCIKDGQEPNHYVHSEDGQNVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKLKDYDYMTFMRKARV
Ga0214917_100120734F000635GGAGMTLTEIAQYAGEKVGKTDADTLAFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTARLITLGSNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDERTGDPDTYHFTGRNSSGVAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQVALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0214917_100120738F010449GGAGMSEEQVWGMEIRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN
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