Basic Information | |
---|---|
Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10012073 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7886 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000635 | Metagenome / Metatranscriptome | 970 | Y |
F002149 | Metagenome / Metatranscriptome | 589 | Y |
F010449 | Metagenome / Metatranscriptome | 303 | N |
F010603 | Metagenome / Metatranscriptome | 301 | Y |
F012569 | Metagenome / Metatranscriptome | 279 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214917_1001207311 | F012569 | AGGA | MSRALDKFQGQYGFSVGTQGTASAGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGKVIGYIAG |
Ga0214917_1001207313 | F010603 | AGGAG | MANEFVRSQRKAKGKAIRFDTQGLTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT |
Ga0214917_100120732 | F002149 | N/A | MTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGIVQDKDGIAGVALARCIKDGQEPNHYVHSEDGQNVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKLKDYDYMTFMRKARV |
Ga0214917_100120734 | F000635 | GGAG | MTLTEIAQYAGEKVGKTDADTLAFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTARLITLGSNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDERTGDPDTYHFTGRNSSGVAELNLYPRLKTAGTTPLRVVEKLKCLTRTNIIVDFPPSQVALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGVKQITPQSLGELTIEEMFSA |
Ga0214917_100120738 | F010449 | GGAG | MSEEQVWGMEIRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN |
⦗Top⦘ |