NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10009957

Scaffold Ga0214917_10009957


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10009957 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9010
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008296Metagenome335Y
F015719Metagenome / Metatranscriptome252Y
F022871Metagenome212Y
F046331Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000995711F046331N/AVERPERSILSVRTGEQIVSHSEAPISITIKTAAGSLVTVRAENGTELDGLVAQGLDAITSATMELEKAIRGSIPTPMTVGQVASALGASITPLDNSTTTLGGRNCPHGKMTAIQGTGKDGSMYRGYFCPAPKGAFDKCKNVYLKTTDSAWNTFVPEQVK
Ga0214917_1000995713F015719AGGAGMTMYYSEVDGTEPTVSIQVKDIKYTFTNESLTRLIEEKDAFKLELAQVERKLKSARFDVREFFQARYEVDNSEILAEVDDVNSLLVNIGSEELTKSWSATVTIAVTVTGIEAPNTEAVEDIIKDGIDVNFTLDGDVWVDDISVESVHPEA
Ga0214917_100099575F008296AGGVNEAWIQEYELLVSSLASEYFKKYPMVEPADIRQTLWMWFVTHPVKYTEWSKLPVKDKEKLIAKSLRNAALKHCEKEKSTKVGYELADLYYYDASVIEAFLPSIIADNYELPNKIKDLNFKFGKGEVTDGNNWLVLRSDIEKAFNQLAEAKQNILRLRFTADNYEWSDLAKELNTSADGARKRVERAVNSLVRILGGWRTYNDIDVIENKPEDNNERPES
Ga0214917_100099577F022871AGGAGMSELEDAWENDEDFWDFVGQNKRMVGMAISDGQGLDILNALRDIYLTINKEPDSAKRMLTLLATVIYASSIGEGQQFTDEIQVLSAMEQFDTSIKEILDEESK
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