NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10009201

Scaffold Ga0214917_10009201


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10009201 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9517
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F034827Metagenome / Metatranscriptome173Y
F039497Metagenome / Metatranscriptome163N
F048123Metagenome / Metatranscriptome148Y
F078229Metagenome / Metatranscriptome116Y
F082149Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000920113F024040GAGGMNIYVTGHNWLAKVDIDTKTIDKTDWYNEACTRAVESVLDQEEKEGVELKIQDYDDFGLGVILLTYLEKDIKKEGEHRVLLTSNVLANAGRWEEYKFVKDYEEKCKEDGL
Ga0214917_1000920118F048123GAGMEQMKPRYDFNKGKLISYDGEIIEFAETKIVDKYADQVQEIMSLFNLKKGEYILTDESTIGHFGKETINKILLEKFKKKYGFSLTNKTNISKIAERMYNFRPF
Ga0214917_1000920119F034827N/AMKYTITARDKEAMVEFNSLKEGEVFSFFDPESVQRGNHAIYMKIKNGSNNIVDLDDGKVFGFSDKKRNTLNDPDEEQGDKVYKLNAKINIIV
Ga0214917_1000920120F078229N/AMNNIKYRYYIEQNKDKDGNYIQSFSVYKTPVVKTIKIKTFKKLKDANNFLTKY
Ga0214917_100092016F082149AGGMKLGLHIDWCVGRWFGRDNNLEINVCLPTISLGYKNEDNDKWFGFKFNLKTDISFESYEYGKIFSLIILGFGVKLSKFNL
Ga0214917_100092017F039497N/AMSEEDNFNSEAGNQLRDMLYKDIVRYAQESDMTAYQAIGVLESLKFDLLNAMRNATREDEDEI
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