Scaffold Ga0214917_10008826

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10008826
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9809
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (92.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002097	Metagenome	593	Y
F004231	Metagenome	447	Y
F065525	Metagenome	127	N
F096877	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000882623	F004231	AGGAG	MTVKPKDFQHEICVYLEGIGECLVCFDILTPGDELDADHSDDYEIDFAVFDEQDKPITYDISKRHYNRCENKATDEMLDITTAWRKDWECSV
Ga0214917_1000882624	F065525	AGGAG	MYLKTYHKQMLRRLEHQPSPLKSFTHGDQNVGNVSVHFENYLNDLQNFGYVVNIEDTWHITGYGLAALHEKKNVATPTKIHNGTTTEFYDGKELKQTCARIGAYDFLKYPSRFGDNLTLPRIHI
Ga0214917_100088263	F002097	GGTGG	VANTKLIWWILIGVSICLIVGVTSMAYVETLYMKAQLKQEMKELRKLKRELREEK
Ga0214917_100088269	F096877	GGAGG	MKITIEYDDVIEAKQAIHAHDVWTALLDINESIRSHTKHDVSETQTIASIKEILSDVSQLLYS