Scaffold Ga0214917_10008278

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10008278
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10252
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016152	Metagenome / Metatranscriptome	249	Y
F038244	Metagenome	166	Y
F072102	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000827812	F038244	AGGAG	MPISSSQISVTTAATLLVSSDAVAEGVYLHSSSGTIYLGGSDVTSSNGYKMDNGDKLTINNHESPIYGITSAGTATMGVLVVTK
Ga0214917_100082782	F016152	N/A	MASVELGISPIDLIDAPDGVLEAMFAYLKERAKANKYG
Ga0214917_100082783	F072102	AGG	MADEVIVLTGIKETIDALKQFDKAAARKFNKVINDELNRAERSADNLVVQFTNPVYGTPMRGWRKTSAARPRTRGGAGWPAWDVSTIQAGITKSRAQGKVRGDYTTSAGALINKSAAGAIFEVAGRTPGSARKNQFIRYLSNSFGKASRLIWAVVDKDKDEIQRRVAAALEDAKKTLQTNLNGRS