Scaffold Ga0214917_10007374

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10007374
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11144
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014710	Metagenome / Metatranscriptome	260	Y
F026209	Metagenome / Metatranscriptome	198	Y
F036073	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000737411	F014710	N/A	MMNTQVTEYKTIPTQFKKKGFVYTQLKREGARAIYQQTREGSTINNYEVVKIGRHNGYIMGGVAIEPAETYPGSSLWGITGWTCTSLEDACKRYEALSS
Ga0214917_100073742	F026209	N/A	MMNKEVTYEIYDQMIGEWRNVTEPAIGGIKWGKREQIGDEVQSAYYDHTYYKVPFYGPCDLGRMQRALYRLYPARFNKFGGYTTVSKVEKLDDQHIKVEMCYHIGD
Ga0214917_100073747	F036073	N/A	MSTTEQATGYETPYNAELHCKKIAWMVKNSPEWDDTKQTLEEYLETVPDYPTDAQVEGFNHLYVAPFVPVKKQKPYEGEDVNEG