NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10006246

Scaffold Ga0214917_10006246


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006246 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12440
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009669Metagenome / Metatranscriptome314Y
F010817Metagenome / Metatranscriptome298Y
F014229Metagenome / Metatranscriptome264Y
F028084Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100062462F009669N/AMLSKIFGPNWRSSSSGIATVVAVCTAIAIHSDPVLVAFLPDGLESYVLGISKIVAVVSGIIFALTVKDAAVTGGTVAQTTEAKDRTNGENIXIN
Ga0214917_100062463F014229GGAGMNKLKLTAIAFLSIFLGACATTPTGQVDPATSVSNALPYVKPAVVLACTVVLDQAVSGNDRIEKAKMINHVASIVEGLTVGTAPTPEQLQKALTDYLPEEKTHWVNYVSVIKDIYAQQFARIDGNTALAIKVLNAIASGCKDATASYVE
Ga0214917_100062465F010817AGGAGLKKFVSVLVLNCVLIGCATVTPNKIEDDKSSYDATTPKQYEKDNGGLISFIGDDAVITSQARERYNNLISMYRIKFKKEKAIELKTDSGIKPYKDNFGNELYLIDSEHLVYFGVLNSWLKEKTPADNIIDKTIDKINN
Ga0214917_100062468F028084N/AMKKLILILPLLLLISCSEPNLDSRELPTKYPETPTMGSADDATKELYKK

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