Scaffold Ga0214917_10005192

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005192
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14041
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (76.92%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y
F037567	Metagenome / Metatranscriptome	167	N
F040587	Metagenome	161	Y
F057320	Metagenome / Metatranscriptome	136	Y
F059898	Metagenome / Metatranscriptome	133	Y
F074805	Metagenome / Metatranscriptome	119	Y
F088817	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000519215	F037567	GAGG	MEWLSFFGYRRPINGQKVYYFGPDIGVWQGRYEIHRDDPVSEHILICEESPGIVDRMDAPWWMPYEGQKKPQRPETDYPKDYPHG
Ga0214917_1000519216	F059898	AGGA	MVNDRDKAMILILSFFRNKMAAVNKHNVSQVKELISTHEIAVSELVDRYVKFVYENS
Ga0214917_1000519220	F088817	GGAG	MNGYQLLAQFEQQIKEALLVPNSWLPENFQDHRTDSVSLADLEKKCHSMEIGETEHQQEKREKDRRIELYRSMIDNGQEITY
Ga0214917_1000519223	F012108	GGAGG	MIKVEMSVREALNMVSNGCNLDMFEKIVCALEVALGVNQRHVVTITGGMNLNNRIPCIKAIRLHTGWGLKEAKDWTDFLVGGWKYDKWHPAPHGTKQSITLKTPEVAEGLLRDLVGLGCEGYISHDIKPCP
Ga0214917_1000519224	F006543	GGAG	MKKFSFAVDIVSDELDRDSVVDSIRECLSNSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEAAGDAHDGKVEKETVGA
Ga0214917_1000519226	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDIDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKNKAKADAWRKALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0214917_1000519227	F057320	AGG	MSYVGLYDDAGSRNAFYIIKDRKIGNKRIGFKEFENENEAKFAHKIQKHLAQHDLAPMVYGDVGRIRYDGELTDYGYLTEVARPMPDCYDDEYCDGYCFESECKNGILIMQVVSYLEEHGLKYWDSHRGNFGFVRRNKKWVPVVIDVGVESFREWDESIYGEYEYDR
Ga0214917_1000519230	F040587	GAGG	MIQWVGILITIIGLAYTGVKDYQKGDIKFPPMPQKQVLTKPVYPIQYCVMAYDPNLDKVFYRHEDGIWREFAPTQKRIGEYYR
Ga0214917_100051927	F074805	N/A	MEVVIGFQFERVSMNDVILFGSILSAVAVAVVGFVFYSVYGGSKASLANAQEGQVFNFVYEQPLHGTHERFLAKVIGKQTLTADQIKRLNRKSRYRINDPEFVRTTNLVTCRTADGKVRNFYAERVTKCRKPLLAGALFKSGFANLF