Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10005059 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14235 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (42.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000744 | Metagenome / Metatranscriptome | 909 | Y |
F013172 | Metagenome / Metatranscriptome | 273 | Y |
F021760 | Metagenome / Metatranscriptome | 217 | Y |
F029368 | Metagenome / Metatranscriptome | 188 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214917_1000505913 | F013172 | GGAG | MSYYWTTKMNDATNRRLEKLQQNGVTIDTSTHAGRQALGYNYLELAFDESENDD |
Ga0214917_1000505914 | F000744 | N/A | MTEDFVKLNVHEIGVILSALQLLDIREEHRIAREYGSAAALYNKLYSLWEQMDTSQTGLRNDVVPSF |
Ga0214917_1000505926 | F021760 | N/A | MCGPQFDYTFQDFLNDASQEEWDEWESKAAELELPLDYYLAEFI |
Ga0214917_1000505936 | F029368 | N/A | MRYNPATDRALSIDEIAAQCRAAILKADEDRQFSVTLEQIADLLFNDDLCDALYAEVLEDARWENDLLIAA |
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