Scaffold Ga0214917_10005059

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10005059
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14235
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (42.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F013172	Metagenome / Metatranscriptome	273	Y
F021760	Metagenome / Metatranscriptome	217	Y
F029368	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000505913	F013172	GGAG	MSYYWTTKMNDATNRRLEKLQQNGVTIDTSTHAGRQALGYNYLELAFDESENDD
Ga0214917_1000505914	F000744	N/A	MTEDFVKLNVHEIGVILSALQLLDIREEHRIAREYGSAAALYNKLYSLWEQMDTSQTGLRNDVVPSF
Ga0214917_1000505926	F021760	N/A	MCGPQFDYTFQDFLNDASQEEWDEWESKAAELELPLDYYLAEFI
Ga0214917_1000505936	F029368	N/A	MRYNPATDRALSIDEIAAQCRAAILKADEDRQFSVTLEQIADLLFNDDLCDALYAEVLEDARWENDLLIAA