NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004957

Scaffold Ga0214917_10004957


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004957 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14447
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (68.97%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F009066Metagenome323Y
F031026Metagenome183N
F033352Metagenome / Metatranscriptome177N
F048158Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000495716F033352AGGCGGMTDLTNFRLMENIEVLACRNSAERVVKALNRGEIEKAKVLARGHEMAWHLTDREFQDLKQPHTNNDFCDDE
Ga0214917_1000495721F005502AGGAGMRSLCWIAAILGMTSGQAANVMIDMRPPTKVKKMKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGAKREWVAVDTGTAVKSKKASKGRMPVVDVFAASEAQFNAMRLPRVAMVEVTK
Ga0214917_1000495728F048158N/AMGRPVNHDVKRAMAATGKSRATVYLQRKKAHAQPLVKAKGSGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPEIDQAEGKMVPVDEADKLAAARDNALIPLLKGMAKRLAPICANKPAAEVEAEVENEVGQLMRQVKAAL
Ga0214917_100049576F031026GAGGLSDGKGKGTLMRGGLAALLLALSFAIAGCATTSQTQDGPPPSPDSISYFIYAWDKAERSNPPCPQAYRDLFAESLKALSDSLAETERARNQ
Ga0214917_100049578F009066N/AMVVTVSPEHEKHLNGILADLVRDVSAKYRKGQTEHGGALWRRPVWKDAWDEILDLCTYVHTLKMQLSVIADLAVRGASDQSVAAAEARESCRQILAVLEGFPSAADKK
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