Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10004957 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14447 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (68.97%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005502 | Metagenome / Metatranscriptome | 398 | N |
F009066 | Metagenome | 323 | Y |
F031026 | Metagenome | 183 | N |
F033352 | Metagenome / Metatranscriptome | 177 | N |
F048158 | Metagenome / Metatranscriptome | 148 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_1000495716 | F033352 | AGGCGG | MTDLTNFRLMENIEVLACRNSAERVVKALNRGEIEKAKVLARGHEMAWHLTDREFQDLKQPHTNNDFCDDE |
Ga0214917_1000495721 | F005502 | AGGAG | MRSLCWIAAILGMTSGQAANVMIDMRPPTKVKKMKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGAKREWVAVDTGTAVKSKKASKGRMPVVDVFAASEAQFNAMRLPRVAMVEVTK |
Ga0214917_1000495728 | F048158 | N/A | MGRPVNHDVKRAMAATGKSRATVYLQRKKAHAQPLVKAKGSGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPEIDQAEGKMVPVDEADKLAAARDNALIPLLKGMAKRLAPICANKPAAEVEAEVENEVGQLMRQVKAAL |
Ga0214917_100049576 | F031026 | GAGG | LSDGKGKGTLMRGGLAALLLALSFAIAGCATTSQTQDGPPPSPDSISYFIYAWDKAERSNPPCPQAYRDLFAESLKALSDSLAETERARNQ |
Ga0214917_100049578 | F009066 | N/A | MVVTVSPEHEKHLNGILADLVRDVSAKYRKGQTEHGGALWRRPVWKDAWDEILDLCTYVHTLKMQLSVIADLAVRGASDQSVAAAEARESCRQILAVLEGFPSAADKK |
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