Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10004808 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10004808 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14794
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (29.63%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14794

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (29.63%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F029716	Metagenome	187	Y
F040073	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000480810	F040073	GAG	MLQFILSPEDMFWQEKMTRQINDCSSIAELREIAVLLTKIATTRQVVIKGLVKDSLDLMQEAYHLKEMNGVPSDEL
Ga0214917_1000480811	F002333	N/A	MTTTATHDEFNSSSQATHTELNAAQATIYTRTNISRAFPDFNDSGVVGIYLRGDSCLVVYRDGTELLYPKEAIKTAFISYTHRLKDFFSYLGPNYRGPSIWHDNSYILFKGWNYSHTLGHLNDNAKLQSQWADKFIRLTDPTKLKALLQSEHTDLGHLVAPDGLRLPDRLPDLDSELEAVQEERPMFGEPNCSCGSFQRQLNNLSLFQQEIEGFKPHCIHLTWIAKYRSLLSERTKARDACPAGVPHTCVAWWYQPPMNHTSNGRFLLLHTKSGVQAPLSHWRTYKPKESFTQHHAWDLFFSMLNAGYVPFPGTSLPQLRMAFKHD
Ga0214917_1000480814	F001018	N/A	MAQITSTKLKELSVIKLYEHYAALEKSLPLLTPESQDLAKAELESCIALRSEKVDRIYYAMAAHEDALERIKKESDLVATAKLHHTSQLKALKGLLSYLRRVLPLDTNKITGRNYQFTLIKKKELTVEINSDPELWDIDEKSTYCMEEETTTTKRVVLRSFSGEVLSDRTEPKTTTKVLPNLDVIRCAYQNGQQLPTGVKVVQDYSVRSKRIFNEPRMDLVASEYPRELLPEDTSAD
Ga0214917_1000480815	F029716	GGA	LHPSIQESFYLKIPAPTDVDDARIKMSCHDHALKDFDLQLEMNDLQTEMLKDGNEVIPYHGDEHDDLEAKRLKLLFGKRFHQNASNAYWYWLQKEKPCSNKVN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10004808

Overview

Ecosystem & Geography

Associated Families

Sequences