Scaffold Ga0214917_10004807

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004807
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14796
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F010599	Metagenome / Metatranscriptome	301	Y
F045545	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100048071	F004475	GAGG	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKTRGFLKSRRTQKAFEASAAIARGENERI
Ga0214917_1000480715	F010599	AGG	MMLLIFFATLSFSFGLSYWATFDKLKKSNLLLAELFIKTRALEELNSQVNNGISMSDDTIHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELKVKGLDNYSEKLLALLPEINQEKR
Ga0214917_1000480718	F045545	N/A	MHNKSINLFNYFICKFKKHDLVNSGACPFTGKSYSACLRCGVMVAK