Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10004006 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16690 |
Total Scaffold Genes | 53 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (43.40%) |
Novel Protein Genes | 13 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (46.15%) |
Associated Families | 13 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010897 | Metagenome / Metatranscriptome | 297 | Y |
F011914 | Metagenome / Metatranscriptome | 285 | Y |
F016774 | Metagenome / Metatranscriptome | 244 | Y |
F025679 | Metagenome / Metatranscriptome | 200 | Y |
F026210 | Metagenome / Metatranscriptome | 198 | Y |
F027756 | Metagenome / Metatranscriptome | 193 | N |
F032548 | Metagenome / Metatranscriptome | 179 | Y |
F035215 | Metagenome / Metatranscriptome | 172 | N |
F036564 | Metagenome / Metatranscriptome | 169 | N |
F044916 | Metagenome / Metatranscriptome | 153 | Y |
F062446 | Metagenome / Metatranscriptome | 130 | Y |
F064403 | Metagenome / Metatranscriptome | 128 | N |
F096610 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_1000400614 | F035215 | GAGG | MKSSEQIAKEISDRISEYKALMVEHDNNPSAVDELESAIHELDHLLRWINE |
Ga0214917_1000400616 | F025679 | AGG | MTKTFKIGEYAVGGKIRVSIPKTLTNIKIDVLDSNYGTNKLVNQYIYYSFDRIRIERDLWQITTGYWTDQITKWITNNWQVEVAENLI |
Ga0214917_1000400624 | F011914 | N/A | MISNNQIKALSEDELAYLYYCCKSEWDSKNMSYPFDWYILKAFRNNSIQPILNKYSGNLTDENKGLIMQILNKLEENK |
Ga0214917_1000400630 | F026210 | GGAG | MSHFVNANPLDYDAKYPKSVDTSVNEDAKMFVMERNEGKEVMFQIEDGTQFYGKISSVPNSEHYCVIVDRNGTPWEWYVREEAIRFVKDIGVKIG |
Ga0214917_1000400635 | F062446 | N/A | MIFNPIKFIAFIFIVLAWILMTFFFVGCANTSYQTIPNAMCEDSQNYSTKYNMMDSPDGSKNPNAQADILNIKY |
Ga0214917_1000400638 | F016774 | N/A | MPPKKPKIQFLTEHLASLNHWRDQLLALEKSYYSKDPEKERTCRNMLNKYLDDVLAYNKNIKEKAKNKV |
Ga0214917_1000400641 | F096610 | N/A | MANRPKTYFVKMTDNINGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLRASDLLTK |
Ga0214917_1000400648 | F044916 | N/A | MGRKKIEKSRIEKGLEKEEKTFSLMAKKIVDAIKDEKFLREFTKQCLEELYKDNPKLFADHSKIKLNKK |
Ga0214917_1000400649 | F064403 | GGAG | MNNPRSKILSDLKKAYLKEHPVTLVDRILVHLNDLSDFQLCQLYAEKYETNPKYMAEQFEFKF |
Ga0214917_1000400650 | F036564 | AGGAG | MKMGRVCLDLNYIVDMDNQEMVERAYECLYEDLMQGVKYGNIGNWIDVIEDKNAKEDMIPEFLLEKENE |
Ga0214917_1000400651 | F032548 | N/A | MKKKQNKEMEKAIKLLAELVDQADEDCPHDYRTIHFTNILEEASEFVKEYKNQK |
Ga0214917_1000400652 | F027756 | N/A | MKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKKCIKINADWHLKDNIRIIELFSEDERPKLGFGLTKNEKEAK |
Ga0214917_100040066 | F010897 | GAG | MKLINTTSYCSEKLKEIIKWCMPQGVFLKDIRKIDIGNTKLGWHGRAWSSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHIYQYKKGKFYHGVKKIRKYNMGTRAKLSEVDASLYAMRKVREYRKGNIKFCLT |
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