NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004006

Scaffold Ga0214917_10004006


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004006 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16690
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (43.40%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Associated Families13

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010897Metagenome / Metatranscriptome297Y
F011914Metagenome / Metatranscriptome285Y
F016774Metagenome / Metatranscriptome244Y
F025679Metagenome / Metatranscriptome200Y
F026210Metagenome / Metatranscriptome198Y
F027756Metagenome / Metatranscriptome193N
F032548Metagenome / Metatranscriptome179Y
F035215Metagenome / Metatranscriptome172N
F036564Metagenome / Metatranscriptome169N
F044916Metagenome / Metatranscriptome153Y
F062446Metagenome / Metatranscriptome130Y
F064403Metagenome / Metatranscriptome128N
F096610Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000400614F035215GAGGMKSSEQIAKEISDRISEYKALMVEHDNNPSAVDELESAIHELDHLLRWINE
Ga0214917_1000400616F025679AGGMTKTFKIGEYAVGGKIRVSIPKTLTNIKIDVLDSNYGTNKLVNQYIYYSFDRIRIERDLWQITTGYWTDQITKWITNNWQVEVAENLI
Ga0214917_1000400624F011914N/AMISNNQIKALSEDELAYLYYCCKSEWDSKNMSYPFDWYILKAFRNNSIQPILNKYSGNLTDENKGLIMQILNKLEENK
Ga0214917_1000400630F026210GGAGMSHFVNANPLDYDAKYPKSVDTSVNEDAKMFVMERNEGKEVMFQIEDGTQFYGKISSVPNSEHYCVIVDRNGTPWEWYVREEAIRFVKDIGVKIG
Ga0214917_1000400635F062446N/AMIFNPIKFIAFIFIVLAWILMTFFFVGCANTSYQTIPNAMCEDSQNYSTKYNMMDSPDGSKNPNAQADILNIKY
Ga0214917_1000400638F016774N/AMPPKKPKIQFLTEHLASLNHWRDQLLALEKSYYSKDPEKERTCRNMLNKYLDDVLAYNKNIKEKAKNKV
Ga0214917_1000400641F096610N/AMANRPKTYFVKMTDNINGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLRASDLLTK
Ga0214917_1000400648F044916N/AMGRKKIEKSRIEKGLEKEEKTFSLMAKKIVDAIKDEKFLREFTKQCLEELYKDNPKLFADHSKIKLNKK
Ga0214917_1000400649F064403GGAGMNNPRSKILSDLKKAYLKEHPVTLVDRILVHLNDLSDFQLCQLYAEKYETNPKYMAEQFEFKF
Ga0214917_1000400650F036564AGGAGMKMGRVCLDLNYIVDMDNQEMVERAYECLYEDLMQGVKYGNIGNWIDVIEDKNAKEDMIPEFLLEKENE
Ga0214917_1000400651F032548N/AMKKKQNKEMEKAIKLLAELVDQADEDCPHDYRTIHFTNILEEASEFVKEYKNQK
Ga0214917_1000400652F027756N/AMKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKKCIKINADWHLKDNIRIIELFSEDERPKLGFGLTKNEKEAK
Ga0214917_100040066F010897GAGMKLINTTSYCSEKLKEIIKWCMPQGVFLKDIRKIDIGNTKLGWHGRAWSSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHIYQYKKGKFYHGVKKIRKYNMGTRAKLSEVDASLYAMRKVREYRKGNIKFCLT

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