Scaffold Ga0214917_10004006

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10004006
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16690
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (43.40%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F016774	Metagenome / Metatranscriptome	244	Y
F025679	Metagenome / Metatranscriptome	200	Y
F026210	Metagenome / Metatranscriptome	198	Y
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F035215	Metagenome / Metatranscriptome	172	N
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F062446	Metagenome / Metatranscriptome	130	Y
F064403	Metagenome / Metatranscriptome	128	N
F096610	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000400614	F035215	GAGG	MKSSEQIAKEISDRISEYKALMVEHDNNPSAVDELESAIHELDHLLRWINE
Ga0214917_1000400616	F025679	AGG	MTKTFKIGEYAVGGKIRVSIPKTLTNIKIDVLDSNYGTNKLVNQYIYYSFDRIRIERDLWQITTGYWTDQITKWITNNWQVEVAENLI
Ga0214917_1000400624	F011914	N/A	MISNNQIKALSEDELAYLYYCCKSEWDSKNMSYPFDWYILKAFRNNSIQPILNKYSGNLTDENKGLIMQILNKLEENK
Ga0214917_1000400630	F026210	GGAG	MSHFVNANPLDYDAKYPKSVDTSVNEDAKMFVMERNEGKEVMFQIEDGTQFYGKISSVPNSEHYCVIVDRNGTPWEWYVREEAIRFVKDIGVKIG
Ga0214917_1000400635	F062446	N/A	MIFNPIKFIAFIFIVLAWILMTFFFVGCANTSYQTIPNAMCEDSQNYSTKYNMMDSPDGSKNPNAQADILNIKY
Ga0214917_1000400638	F016774	N/A	MPPKKPKIQFLTEHLASLNHWRDQLLALEKSYYSKDPEKERTCRNMLNKYLDDVLAYNKNIKEKAKNKV
Ga0214917_1000400641	F096610	N/A	MANRPKTYFVKMTDNINGTFTISEAKVLDKVNQHTRHWRSFDKRKLTSKLRASDLLTK
Ga0214917_1000400648	F044916	N/A	MGRKKIEKSRIEKGLEKEEKTFSLMAKKIVDAIKDEKFLREFTKQCLEELYKDNPKLFADHSKIKLNKK
Ga0214917_1000400649	F064403	GGAG	MNNPRSKILSDLKKAYLKEHPVTLVDRILVHLNDLSDFQLCQLYAEKYETNPKYMAEQFEFKF
Ga0214917_1000400650	F036564	AGGAG	MKMGRVCLDLNYIVDMDNQEMVERAYECLYEDLMQGVKYGNIGNWIDVIEDKNAKEDMIPEFLLEKENE
Ga0214917_1000400651	F032548	N/A	MKKKQNKEMEKAIKLLAELVDQADEDCPHDYRTIHFTNILEEASEFVKEYKNQK
Ga0214917_1000400652	F027756	N/A	MKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKKCIKINADWHLKDNIRIIELFSEDERPKLGFGLTKNEKEAK
Ga0214917_100040066	F010897	GAG	MKLINTTSYCSEKLKEIIKWCMPQGVFLKDIRKIDIGNTKLGWHGRAWSSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHIYQYKKGKFYHGVKKIRKYNMGTRAKLSEVDASLYAMRKVREYRKGNIKFCLT