Scaffold Ga0214917

Basic Information
Taxon OID	3300022752 Open in IMG/M
Scaffold ID	Ga0214917_10003825 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022752 Open in IMG/M

Scaffold ID

Ga0214917_10003825 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17164
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (47.37%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

17164

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (47.37%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F008741	Metagenome	328	Y
F008938	Metagenome	325	Y
F030060	Metagenome	186	N
F086724	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000382515	F030060	N/A	MIKGIIDSEAPQIHWKHLNVSGGRILDLGCAFWTEAERQEGNGTAKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAFQIDVWITENSITHIKCDIEGDETQFLPIGNVHNLKEIAIELHYSDAWLKEFMSWFDSIGFECYRHDSVSFCPEISVIYGRLKC
Ga0214917_1000382517	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFELTSYVRAGRKGDVIDLEVWPNKYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAKGLPETYNLVAPFGLSQGYYRNPLELIVRARQSMGKDNFYVLCPADIKIEGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTCFFPQKEEWETDNIFAFEGLVSMD
Ga0214917_1000382518	F005584	GAGG	MAGTISTSYFATDLSYMIEDLYQSVTGLGSSSVSASVTDLTTASELDIGGEVFRITQSLVVLASSISAPSIGSLCTVSGIERMVGGFSQSTDGLSYTIELAEITT
Ga0214917_1000382519	F086724	GGAG	MASIEREVENALLNVVSAIGGVNFYTSERATARTIPSVTVQAQIGGEELVPFSGVFKT
Ga0214917_100038252	F008938	GGA	MIRQIDLALKWNVSKAAISKLVKAGMPLTSVSDAERWKLANQKRVSKVEISSTPSQTSSEPSKELDVESYKSTSSLGRLNRAKQAEVVAYSLVATAATNKNPVAMRSAVQGWGEAKKRVAEAEMEHARWEEVNRVTIRMDEVREVFGKWLGAIRNLMDAMPSSLAARANPSDPECAKRAIQEGVDQIFVTIQKAEGAFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214917_10003825

Overview

Ecosystem & Geography

Associated Families

Sequences