Scaffold Ga0214917_10003750

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10003750
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17348
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F011284	Metagenome	292	N
F012433	Metagenome / Metatranscriptome	280	N
F019290	Metagenome	230	Y
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F025739	Metagenome / Metatranscriptome	200	Y
F033350	Metagenome	177	N
F045612	Metagenome	152	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000375012	F011284	N/A	MTTLQMAAVESMEKKYKRGVEEHQGTKLWEMPAVRLVENAIEEATDQLTYLLTLRSQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQTKPPL
Ga0214917_1000375014	F025739	GAG	MKRLLTIGVCEIQKWILGFIVGSFLCGCATTRPYDIGEVPNQDSITDYIMRWDKLDRSKATPEEYRQLFGQSLKTISRLVEENERLRKRLDQ
Ga0214917_100037502	F023585	AGGA	MSVKRLKLLEEFHAIVSRRLKELFKDFDHAKRENYRDIISHLDYSHRITKELLDRAKKYQKRDMDKAKK
Ga0214917_1000375023	F090073	AGG	MSDILDDELNATFVRPGRDFKGQPLAEYTEGSRLLMIQCKEQQDSSIYFIWAFLYLHILLAKNKKEAIKLAWDKDLFRERLLEWVADKTQEDRELATNIVSSIIDEASKARVSIISSGGEGITLGNE
Ga0214917_1000375024	F019290	N/A	MEGTSYWGTTNIKIASCVAAFGGTLRQSDPVTHVVLENGTRQVTFWFNSGGGAEAKKEMECKWSDMTSDMESPIRYVRAALENRETLLGLVKRAEPIQTIKRGGQTLLVPINAKPELKKAILKAI
Ga0214917_1000375025	F006138	GAGG	MPATTIGQANLVFGLTAETIGLVQSFSETRNIEKVEARNASGDITGVAYYNPTTAYSISVAVTGLGALTAGGAFSTLANATTVGTCRIDSIALNKSNTGFVMVDISATGYPNVS
Ga0214917_1000375026	F012433	GAG	MSADQVADLRERLARIEERQTNIIAILERHTSELAQWSNKINTKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVLPR
Ga0214917_1000375027	F045612	GAG	MNYQYTYDDFIASLKWLQDEGYIEQFIDEDGNACVRICEGAENCEI
Ga0214917_100037503	F033350	GGAGG	MSVDVEVPKIKWSMLEWKTPEEKPKSDERVLMDCGGEVVVGRFVDGSFVSRSWGHSESDVRLWASWPKAPKW
Ga0214917_1000375031	F009142	N/A	MNNSVQINVEDALENLLSHISGLHIYKTNRVGAKLFPFATISASVGGQLLGNYTGVYDVSVTIDYSDTAAKVSQEAFDAEYCSIFESFYSQTPSLFTKIQNNILDTKVYTARITSQTPTIRTAKRAWQRGLRMSLVCTPSELDDGLRFLDFHEKRNSMYIGVI
Ga0214917_100037504	F023833	AGGA	MTKSHSELIQDIINDAMSKAASLERERCAELVQRLSDGTEDQVIRDILNEVVVAVRRLGDER
Ga0214917_100037508	F005702	AGGA	VIFGLLVFIGLVILQGVRLFAKHIDQQNYERRRFYLSVAADLDRLDKMIAEGNHPKQQELVLPSKNWVGRN
Ga0214917_100037509	F005846	N/A	MTSLPLPARPVGSAVPASHDEFSNGFSIEGKLNGWRGWFDQETQQGYNRHGKFATNHKLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVVWEGFVMKALDDGKYPFITNPSYCSHAWQKQRIRS