Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10003498 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18071 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (66.67%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000635 | Metagenome / Metatranscriptome | 970 | Y |
F002149 | Metagenome / Metatranscriptome | 589 | Y |
F007467 | Metagenome / Metatranscriptome | 350 | Y |
F010449 | Metagenome / Metatranscriptome | 303 | N |
F010603 | Metagenome / Metatranscriptome | 301 | Y |
F025460 | Metagenome | 201 | N |
F030376 | Metagenome / Metatranscriptome | 185 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_1000349810 | F010449 | GGGGG | MSEEQVWGMEIRLARMEERQVQLYAMVERSLAFHGDVANRLSALEHLRTKVLAVAGLIGLACSMAWDVLKNRFN |
Ga0214917_1000349813 | F000635 | AGAAG | MTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAELNLYPRLKTSGTIPLRVVEKLKCLTRTNYIVDFPPSDSALNDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGIKQITPQSLGELTIEEMFSA |
Ga0214917_1000349815 | F002149 | AGAAG | MNALEYIEESGVPESMWPNLEAWYGWFEKQGMVGVVKDGEEIAGVALARCVKDGQEPKHYVHSEDGENVFVDLTISSKGGKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV |
Ga0214917_1000349818 | F025460 | AGGAG | MAVLDVPELMNMFRQDELQKQAVAEAQRKQALEERAMAIKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPTFAPYLAGIGSTISNEQNLQNEDIETQRAELSDRLKELQKKRVKQEIEIAKGDTRTFAMEAGLGLVGAKPRADVLKDIEAEAGVYKNKLAELGFNRQTGQMETNVPDYQSSTMPLQAPTQVAPEKPAQAPAQAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQAR |
Ga0214917_1000349821 | F030376 | GAG | MKAITTITLMAMLMASGMAEDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN |
Ga0214917_1000349823 | F007467 | N/A | MKDKEAWDKFEDGLQDAQSYDEAVAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN |
Ga0214917_100034985 | F010603 | AGGAG | MANEFVRSPRKAKGKAIRFDTQGQTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT |
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