NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10003498

Scaffold Ga0214917_10003498


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10003498 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18071
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F002149Metagenome / Metatranscriptome589Y
F007467Metagenome / Metatranscriptome350Y
F010449Metagenome / Metatranscriptome303N
F010603Metagenome / Metatranscriptome301Y
F025460Metagenome201N
F030376Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000349810F010449GGGGGMSEEQVWGMEIRLARMEERQVQLYAMVERSLAFHGDVANRLSALEHLRTKVLAVAGLIGLACSMAWDVLKNRFN
Ga0214917_1000349813F000635AGAAGMTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLDDARTGDPDTYHFTGRNSSGVAELNLYPRLKTSGTIPLRVVEKLKCLTRTNYIVDFPPSDSALNDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANADLALMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0214917_1000349815F002149AGAAGMNALEYIEESGVPESMWPNLEAWYGWFEKQGMVGVVKDGEEIAGVALARCVKDGQEPKHYVHSEDGENVFVDLTISSKGGKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV
Ga0214917_1000349818F025460AGGAGMAVLDVPELMNMFRQDELQKQAVAEAQRKQALEERAMAIKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPTFAPYLAGIGSTISNEQNLQNEDIETQRAELSDRLKELQKKRVKQEIEIAKGDTRTFAMEAGLGLVGAKPRADVLKDIEAEAGVYKNKLAELGFNRQTGQMETNVPDYQSSTMPLQAPTQVAPEKPAQAPAQAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQAR
Ga0214917_1000349821F030376GAGMKAITTITLMAMLMASGMAEDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDN
Ga0214917_1000349823F007467N/AMKDKEAWDKFEDGLQDAQSYDEAVAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN
Ga0214917_100034985F010603AGGAGMANEFVRSPRKAKGKAIRFDTQGQTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT

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