Scaffold Ga0214917_10002994

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10002994
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20041
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (64.29%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012433	Metagenome / Metatranscriptome	280	N
F019290	Metagenome	230	Y
F023585	Metagenome	209	Y
F027777	Metagenome / Metatranscriptome	193	N
F029043	Metagenome	189	Y
F033350	Metagenome	177	N
F074559	Metagenome	119	N
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000299410	F006138	GAGG	MPATTVGQAGLVFGLTAETIGLVQSFSETRNIEKNEVRNATGDITGIGYYNPTTAYSLSVAITGSNASLTVGGAFSTLANATTVGTVRIDSLTINKSNSAFVTLDVSATGYPNVS
Ga0214917_1000299411	F019290	N/A	MQGTSYWGTTNIKIASCVAAFGGTLRQSDPVTHIVKDDGSRQVTFWFNSGEGAEAKAEMERNWGDMKSDSESPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPINAKPELKKAILRAI
Ga0214917_1000299412	F090073	GAGG	MSDILNEELNATFVRPGRDFKGQPLAEYTEGSRLLMIQAKEKEDSPVYFVWAFLYLHILLAKNRKDAIKLAWNKEAFKESLFDWVSDKTQEDRDMATNIVSSIIEEASKARVSIISSGGEGFSMGNE
Ga0214917_100029942	F008741	AGGA	VEKTIKYSQRLGDVLRCLPACKYLADQGHEVFFDCFPQYHSVFDLVSYVKSGNKGNVLDLEIWPKKYEAYRKSKRSWTDFVYSHPEIKAADKTNIILDKLDDKPAVGLPETYNLVAAFGNSQGFYRNPLELITKARNDLGKDNFYVMTPPEIQIQGLSTYTAPSVSEMAKAIRGAKDFWAINSTPIVLASVVRRGKPTAFFPQKNEWETDNIFDFDGMFRMD
Ga0214917_1000299424	F011284	AGCAG	MTLEQGVEKTTEEVFTKKHDLHLTTLQMAAVESMERKYKKGVVEHGGTKLWEMPTARLVENAIEEATDQLTYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPL
Ga0214917_1000299426	F074559	N/A	MKAQNPWQKLLQEHIKDKFAPPQPEGYYTREQVSKLWQKSMNTTSRMLNQMLQQKKVEMKRHPFIVARKDHRVIRNLKIFKILPTKHPHK
Ga0214917_1000299428	F005846	N/A	MTSFPLPARPVGSAVPALHDEFAEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHIEAVTFDLQPNKLLRFVRLAHHKISSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITDPSYCSPAWQKQRIRW
Ga0214917_1000299429	F005702	GAGG	VIFGLVVFIGLFILQGLRLLGKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKEPKQPELPSKNWVGRN
Ga0214917_100029943	F005584	AGGAGG	MAGTISTSYFATDLSYMIQDLYQSVTGLASSAVSASVTDLATSSQLDIGGEVFNITQSLVVLASSISAPTIGSLCTVSGTERMIGGFSQSTDGLSYTIELAEITT
Ga0214917_1000299431	F027777	AGGA	MSEEMPTLWHQEPAKKQLPNETTDEWVVRVFGAFPDTEFDQRNDFRFLKLPKTQKENAEGFGVFDDGQNKK
Ga0214917_1000299434	F033350	AGGAGG	MSAVDVEVPQTKWSMLVWKTIKEKPHNDERVLMDIGGEVVVGRFVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0214917_1000299436	F023585	AGGAG	MSVKRLSLVDEFHGLVSRRLKDLFKRLNHAEVENFKDIISHLDYSHRITKELLERAKKYQKIDMEKTNKKKEIQ
Ga0214917_1000299439	F010463	AGGCGG	VIAHPQELVLAATIHRVKLCEDRIKEFEQMVSTLTAQMAQNRAELASKGLANLVMGTTTPLDIPRELRPTFGRYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSTGRASK
Ga0214917_100029945	F009142	N/A	MNNSVQINVEDALENLLANIPNLNVYKTNRVGARLFPSATISASVGGQLLGNYTGVYEVAVTIEYSDTAAKISQEAFDSEYCSIFEAFYSETPPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRYLDFHEKRNSMYVGVI
Ga0214917_100029948	F029043	AGG	MSKDEQACKALQYLLDEGFISLGYIGGKPAVYLTTSLLEARKAITKLVSNDSADWWK
Ga0214917_100029949	F012433	AGCAG	VEVSADQVADLRERLARIEERQVGLISILERHTSEIAQWTAKINGKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR