Scaffold Ga0214917_10002429

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10002429
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22599
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (95.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008303	Metagenome / Metatranscriptome	335	Y
F022157	Metagenome	215	Y
F042869	Metagenome	157	Y
F057982	Metagenome	135	N
F095383	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000242923	F022157	GGAGG	MWDVAVTFMLMMFGAFTVIAFGAILIWALYVFQNGVDDE
Ga0214917_1000242926	F057982	GGA	MTEYKYRITYNDGMYADWDSMQKELARAYRWGVFLYAIRLNIGAWRAGHKSFKYWLYVLRRKPKITREKL
Ga0214917_1000242927	F042869	GGAG	MNELIKKNDTIKNYVPIGSIELKLAVARAEGYAIRVEETRYHHVVDGTVATSVDESKPKYYFFNDRTLPLLDPYRIAMEFYLKEKNT
Ga0214917_1000242929	F008303	AGGA	MIDKLILSAVLGVVGFNGLFPDPPQPLTPWQLQVKAKEASKSEVCNKKKQSKTVKQLCKRWGKND
Ga0214917_100024294	F095383	AGGA	MKKNPLAQYRSELFGSRGVDVAHALEYVDQLATASSDAVAVQTAARVLLNTVIGAVDQILNAPSPERLALIDLIDERIDAHKLIREDEVDGKISSWMDDNLDVDDEISNWMSDNFDVNDYNLDDAVSDKISEWASNNLADEVEAVIKNSLTFSVIVN