Scaffold Ga0214917_10001835

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001835
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26922
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025215	Metagenome	202	Y
F030660	Metagenome	184	Y
F066434	Metagenome	126	Y
F089933	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000183512	F030660	GAG	MSGDDIALDFMSEEEIAEIIATEGVFQVDMTDIDDLLEEVATDSDYE
Ga0214917_1000183515	F025215	AGGA	MKLKVHHPDGELIAEVYDYAAGALLMSLYGDNSIITYRGKTLWREGKDGEGAESYDTTSMTIHKRLVEMGVIRDA
Ga0214917_1000183520	F089933	N/A	MPNYDFKCMCGSTREVFIYHKDYEKYVVRCDKCYQPMERVYTVPGIKFKGPGFYSTGG
Ga0214917_100018356	F066434	AGGAGG	MAENRGGLRPTAPQNNPANISATGGAGQSGTQPARYISGLPYGEGQQTMNQQLSAPMAGPNKATAVSNPVAAMMPPLTPLTAPTERPDEPITTGMDFGAGPGSEALNLPRERSLSEVLASMIDIDPTGEVQDLYNFVVSRGL