Scaffold Ga0214917_10001732

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001732
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27783
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F014845	Metagenome / Metatranscriptome	259	Y
F034856	Metagenome / Metatranscriptome	173	Y
F079990	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100017322	F000368	AGG	METLKQVSLTWFRAAASAAIALYLAGETDLKTLGMAALAGFLGPVLKWLDPSASEFGRAK
Ga0214917_1000173221	F014845	GGAGG	MAARKPRKKAAPKRVRTVKDESYTELEMYCIWLNEYYRSLIKAGFSSELALSFVMEKSSYPSWVSYKAPSEDEIKRMLEDEDDD
Ga0214917_1000173223	F034856	AGGAGG	MSMYYFTTPTVDETPAGDNILFARYKIARGISVLRLNGVYSSYRYPSQILTNTAEEYYAGGTTTLITQQTADALTAQGYGEYITPA
Ga0214917_1000173231	F079990	GGAGG	MKKLSGGKKPKNQGSAGKAPTQKPMTAKKASSKGGKTYFSSNPSGTRGSRSK