Scaffold Ga0214917_10001220

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10001220
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33409
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (76.36%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006261	Metagenome / Metatranscriptome	377	Y
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F024770	Metagenome / Metatranscriptome	204	Y
F027488	Metagenome	194	N
F036203	Metagenome	170	Y
F044450	Metagenome / Metatranscriptome	154	N
F053995	Metagenome / Metatranscriptome	140	N
F056549	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000122013	F027488	GAG	MTKVWADSPYDGTRLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMIADGHLKIITKGNSRGNATVYQLLWKKLPNSVGDEESLGVSKLPNSDTLNSPTLEAQLPNATPYHPSYTTVLSTTKSDETAIAVVALSEAVARKWWEKQRVKPLGKSAWHSLLAICQAAEKRGYNAEQIEQALDYIGTVPSMRQMDLVLRGVGVRTKHEQSAIKALDLAEKLKNESV
Ga0214917_1000122022	F006261	GAG	MATISSGYTTTEPIQVDNPRTWSFTAPENPTIQIAGINVLQPLNSTVVESYGVFKPLGASKTVVVAQSIYGVDGTYEFVTKGETEWNNLYPVLTYQGTLHVHDPLGRQKYVRFVERNWTETGKIGSLIRRVKVTYFEVDKP
Ga0214917_1000122033	F036203	GAG	MAETQQPTNSSVAGNATGSSSKAQRARGVSDVQDVSPKISQDEFFAQLDKLVGAGREQGGCSIGILVNNLEEPVRSKLIEIMKNEKVNSARLAEVMLAFGLQVSSSDVLRRHRRRLLGKDGCKCPRES
Ga0214917_1000122035	F019308	N/A	MASKMGIRFDLNGDEQLVKALKSGKEKSPQAIAQAIWEEANMIFAKSQILVPVDTGVLRGSGGVSAPQMGNQGYFVDIFYGGPAAPYALYVHEIIGNYHNPPTQAKYLEQPLMEAMDGLQSRLKGRIVDIIEKGKQG
Ga0214917_1000122036	F008607	AGTAGG	MDAIYNKVAEFMNDTVSFYAKSTVDKYNKTTFSNTALSVVGRLIYDTLKSRDVQGTEVVDVGRFITKGPQTSITVNHKMVIGADTFTINSIDNIKDENGDHHTVIRFGR
Ga0214917_1000122050	F056549	GGGGG	MAEPYVPIASYNTYNTLLTELEVTTNDAETNTDDLATAVANTLTHKQTAENLVASKFDLFFLVGA
Ga0214917_1000122052	F024770	AGGAG	MAVTHARVSVGTTATKLTSDYDGKDGQTINVQNPSASTTVYLGGEGVTTTDYGFALAGGTSFSIELQDDEKLYGVVATSTQTVNIIRQGT
Ga0214917_1000122053	F044450	N/A	MKAEILKSMLVDGRKLVAGDIVEVKGWRHAKSLANNRYIRFIEEKEEVAEVEKPKATKKKKEVAE
Ga0214917_1000122054	F053995	AGGAG	MPNVNRLSKGEVAVGALQVGTNDTVYGIEFGTVEIDPAAINATTRGGTTFTLTGAATTDIIIVNPPSTLNDDLIYCGAAVTAADTVTVYLYNPTAGSINQAAATFSYCWIDTTA