NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001174

Scaffold Ga0214917_10001174


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001174 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34018
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (81.82%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006261Metagenome / Metatranscriptome377Y
F008607Metagenome330Y
F011482Metagenome / Metatranscriptome290Y
F019308Metagenome230N
F027488Metagenome194N
F035280Metagenome172Y
F036203Metagenome170Y
F042308Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000117410F036203GAGMAETQQPMSSNDVGSVTGSSSKARRARGVSDAQDVSPKINQDNFFKDLDSLVGIGREQGGCSVGILVSKLDEPIRSKLIQIMKNEKVNSARLAEVMLAYGLQVSSSDVLRRHRRRLLGKDGCKCPRES
Ga0214917_1000117421F006261GAGGMATISSAYTTTVPIQITNPAQWSFTAPENPTIRITGIDVLQPLNSTIVESYGVFKPLGASKTVVVSQSLYGVDGTYEFVTTGETEWDELYPVLTYQGTLHVHDPLGRQKYVRFVERNWTESGKIGSLVRKVKVTYYEVEAP
Ga0214917_1000117426F011482AGGAMAEEIQPTLGEVMRRLDDLTMEVKQMNLNVSQTYLRKDVYDSDTERISQAMEHITDRIQKMESRSEWVIRTVGALFIATIVGASMYVGQIIGF
Ga0214917_1000117430F027488GGAVWSDSPYDGTKLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMITDGHLKIITKGNSRGNATVYQLIWKKLPNSVGEEESLGGVELPNSDTPNSPTLEVQLPNSTPYHPSYTSVLSTTKSDETAVAVVALSEVVARRWWEKQRVKPLGKNAWHSLLAICQAAEKRGYSEQQIEQALDYIGTVPSMRQMDLVLRGVGVRTKHEQSAMRAVELAKKLENESI
Ga0214917_1000117439F035280GAGGMEKKIGRYWFAWGRTSGFALGLSIDKHHWTIDLGFWYIGQEF
Ga0214917_1000117445F042308AGGAGGMGWDVTQVGANITTKKFIEYYIRSTYDGIYEAVRIFEGKNVGGQKAFYVALRRLENNSVFACVFLTKRKNGQFAIKVMGEDEEPFFYEAPKSFIKVLTPAKTYTGAWWRNKCLEKYQELANA
Ga0214917_100011747F008607AGTAGGMDAIYTKVAEFMLDSATFYPKSTVDKYNKTTFSVSGTTITGRLIYDTVKSRDVQGTEVVDIGRFVTYGPYTSITVNHKMVVGTDTFTINSIDNIKDENGDHHTVIRFGR
Ga0214917_100011748F019308GGCGGMASKMGVSFDLEGDKALIKALKDGKDRSPQAVAQAIWEEANTIFAKSQILVPVDTGVLRGSGGVSAPQMGNQGYFVDIFYGGPAAPYALYVHEIIGNYHNPPTQAKYLEQPLMESMNGLQERIKGRIIDIIEKGSKG

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