Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10001174 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34018 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (81.82%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006261 | Metagenome / Metatranscriptome | 377 | Y |
F008607 | Metagenome | 330 | Y |
F011482 | Metagenome / Metatranscriptome | 290 | Y |
F019308 | Metagenome | 230 | N |
F027488 | Metagenome | 194 | N |
F035280 | Metagenome | 172 | Y |
F036203 | Metagenome | 170 | Y |
F042308 | Metagenome / Metatranscriptome | 158 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214917_1000117410 | F036203 | GAG | MAETQQPMSSNDVGSVTGSSSKARRARGVSDAQDVSPKINQDNFFKDLDSLVGIGREQGGCSVGILVSKLDEPIRSKLIQIMKNEKVNSARLAEVMLAYGLQVSSSDVLRRHRRRLLGKDGCKCPRES |
Ga0214917_1000117421 | F006261 | GAGG | MATISSAYTTTVPIQITNPAQWSFTAPENPTIRITGIDVLQPLNSTIVESYGVFKPLGASKTVVVSQSLYGVDGTYEFVTTGETEWDELYPVLTYQGTLHVHDPLGRQKYVRFVERNWTESGKIGSLVRKVKVTYYEVEAP |
Ga0214917_1000117426 | F011482 | AGGA | MAEEIQPTLGEVMRRLDDLTMEVKQMNLNVSQTYLRKDVYDSDTERISQAMEHITDRIQKMESRSEWVIRTVGALFIATIVGASMYVGQIIGF |
Ga0214917_1000117430 | F027488 | GGA | VWSDSPYDGTKLLIHLALADISHDDGRFFASQSNLASKGRCSVEYVRKVINEMITDGHLKIITKGNSRGNATVYQLIWKKLPNSVGEEESLGGVELPNSDTPNSPTLEVQLPNSTPYHPSYTSVLSTTKSDETAVAVVALSEVVARRWWEKQRVKPLGKNAWHSLLAICQAAEKRGYSEQQIEQALDYIGTVPSMRQMDLVLRGVGVRTKHEQSAMRAVELAKKLENESI |
Ga0214917_1000117439 | F035280 | GAGG | MEKKIGRYWFAWGRTSGFALGLSIDKHHWTIDLGFWYIGQEF |
Ga0214917_1000117445 | F042308 | AGGAGG | MGWDVTQVGANITTKKFIEYYIRSTYDGIYEAVRIFEGKNVGGQKAFYVALRRLENNSVFACVFLTKRKNGQFAIKVMGEDEEPFFYEAPKSFIKVLTPAKTYTGAWWRNKCLEKYQELANA |
Ga0214917_100011747 | F008607 | AGTAGG | MDAIYTKVAEFMLDSATFYPKSTVDKYNKTTFSVSGTTITGRLIYDTVKSRDVQGTEVVDIGRFVTYGPYTSITVNHKMVVGTDTFTINSIDNIKDENGDHHTVIRFGR |
Ga0214917_100011748 | F019308 | GGCGG | MASKMGVSFDLEGDKALIKALKDGKDRSPQAVAQAIWEEANTIFAKSQILVPVDTGVLRGSGGVSAPQMGNQGYFVDIFYGGPAAPYALYVHEIIGNYHNPPTQAKYLEQPLMESMNGLQERIKGRIIDIIEKGSKG |
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