NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10001053

Scaffold Ga0214917_10001053


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10001053 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35998
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (70.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013881Metagenome / Metatranscriptome267Y
F033724Metagenome / Metatranscriptome176Y
F061667Metagenome131N
F066598Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000105312F066598GGAMGFLIALVAMVIVFCLMLPIVGIMYFDTLATQKESKAQIERMERLRKQLEEDRKRMDQANRKDE
Ga0214917_1000105329F033724N/AMNVPRPKSEMTSVTKTVSARLIPVHYVEWKKLGGVAWLRKQLKESFQKTKKDHHVK
Ga0214917_1000105342F061667GGAVKQLKISQGKKWLPDRGIKVQFPATEFELAVEAWLSKLEIVKKDVDKRWGTDRLQKLADANFMEKFREQEQRVWQACQDKDKDRLEKSAAGMVRAYQALEAWALSSGVSQRPEVGVVEHVAKDGTLMVVVATKDDAVWYRENRPEVDGQHVWTMDEIELLIQAEINQAVVEAKIRYAKFDPVVVKVEKLGGATGFDDFVNDLDLSEPDKSPKMFDSKTAEKFKHGQNRAI
Ga0214917_1000105344F013881AGGGGGMPGNPKRKKDVAFLNSMPEEMILSMVESGQSIAHICVNLGISKRALDDWIDENDMGAMITRARARAADLMACETLTIADGMDDANPTKPTVRIRTRQWLAERWDQKTYGLQKANQLNINIGSMRMDALRHAEVIEAELSTGQDQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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