Scaffold Ga0214917_10000975

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000975
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37524
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (79.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003768	Metagenome	469	Y
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F060870	Metagenome	132	Y
F078657	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000097514	F045719	AGGAG	MESATWYKLKDESWGVKVRYDGQEGDQVTVTNKKGEEKTVWLDKRVAKFDDAQLWSVSDQKPITRRETQDEEPF
Ga0214917_1000097515	F078657	GGAG	MSDNQNIFYEAWISDLQRDLDSLREDKRELLRKVAMLEQLVAEYGNKVSNLIHNRGDE
Ga0214917_1000097522	F033780	GAGG	MTPCPWSLVAIHWIDAFDSANGWIATKEYKPKPQHVVSVGWLWPDVLEGYLSVTCSWCPEEEPELDTVGMVTHIPVGMVQKVVALGNPDF
Ga0214917_1000097526	F060870	AGG	MDMAFASIIVAAITAVGGIIVAALNKFRKENHDDHAYVRGVLTMLYKSQNRIEVKVDRVDERLTNHLESHASERMLDNERTVHQDGVEGNKQVS
Ga0214917_1000097532	F003768	GGTGG	MAHFAKIENGVVREVLVIGNDDAPTEAAGKQFIAACGIAGEWVQTSYNNNPIEGQDRGKYAGIGDLWDGEQFVSPTVEVTE