NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000826

Scaffold Ga0214917_10000826


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000826 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40227
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (90.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002420Metagenome / Metatranscriptome560Y
F008303Metagenome / Metatranscriptome335Y
F011483Metagenome290Y
F028085Metagenome192Y
F053891Metagenome140Y
F075693Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000082625F028085GGAGGMLEAITSILFMATLLALGAILFIFVCAMIGWAIFTMQNEVDND
Ga0214917_1000082628F002420GAGGMTFRETTIKYIKDVLRPRTIYEVIDKELQEAHLRKLEAETAAEYADAAIKYNSRRIERLKQRLFEHAEEDI
Ga0214917_1000082630F008303GAGGMIDRLILSAVLGTVGFNGLFPDPPPPLTLKQKAKERSISAMCDRKPKTKAGRDLCKRWEKHNG
Ga0214917_1000082631F075693GGAGMDEGIQKAWNLMSMHNSELLLENEQLKKELMRKSLWYAIKRAINIWRGRE
Ga0214917_1000082634F053891GGAVPRPKSELTKSGKTIGVRVTASEYEEWVKIGGSKWLRKLLQESRDNRLNVPKPKTT
Ga0214917_1000082643F011483AGGMTYDLVAYLRSEIKELHNILHETQLALAQANDRLSRHSEPLSEERVYTLYKRSLDWRQLAKDVEAEHGIE
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