NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000321

Scaffold Ga0214917_10000321


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000321 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62397
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (55.13%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F000744Metagenome / Metatranscriptome909Y
F004314Metagenome / Metatranscriptome444Y
F027765Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000032153F004314N/AMYDDYDLDYTYASDYSYDLEEYYTQDARDLDEDYARDGHDYESLAYRHYA
Ga0214917_1000032165F027765N/AMNEEDIKQFMTAFEDFMQHSETEQFNHSAWTAAKKYTDHYYEQKAAELEVTVDYYIQEFV
Ga0214917_1000032168F000744N/AMRIMTEATVQLNVQEIGVILSALQLLDIREENRIAREYGSASALYNKLYTVFEQMDTSQTGLRNDVVPSF
Ga0214917_1000032176F000345AGGAGLEHFLEKMTETKNSWQEWWDSDACKNLQKANEEAKQRAVGKYYMLSEEDKLDMVQAICYIMCKAEEEGTSHRGLQDALGIYPAGFWIDNLMDTHNALWSYYHDKKREKELKDDLNTLEDFIK

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