Scaffold Ga0214917_10000274

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10000274
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66214
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (79.73%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F001900	Metagenome / Metatranscriptome	620	Y
F002501	Metagenome / Metatranscriptome	553	Y
F004006	Metagenome / Metatranscriptome	457	Y
F005053	Metagenome / Metatranscriptome	413	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y
F038675	Metagenome / Metatranscriptome	165	Y
F078287	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1000027420	F001106	N/A	LNYLEQGEYMSFETLKIAELKKIAEDFGVEIEGLKNKTDIIAALSEEGVTWSVYEKTLEKLKEEDDMATEVLAKPVNKKVNPEDTLLVKMERHNYSYETHGFTFTKEHPYAAMDKDTAQEIFDKEEGFRLATPKEVQEFYN
Ga0214917_1000027421	F005054	N/A	MAEILLKSQSPITHQVYWNGDIGTPNALPTVKIYDVTSDPAITPPLSPTTVLETITSIADENNPGSYVAYIPFQYTDRNRTLRLKWEYYIGEKYISREDEVYVVTPYVDFNHVQDLGFSIDSSDPGYKSYKELILAERYARKQIEQYTGQKFYLYDDVYSIYGYDSDTLPLPAKIQDLHELYANDILLLDNIHSINNWNYDVEITTTGYGIRVNRANLLDNTVYTANGMVPPSINDGSGIFKSGVQYKIQGRFGWEKVPDDVELAGVELMKDYFSKDKTWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKVEII
Ga0214917_1000027422	F001229	AGGTGG	MNDLIDSVLSMQLDVYRQTEIQDSDTGAIKREWSYHRTLDCHAKGVISNSATTRSSDKQVFSNKYMNDQIIQVRTSEKLTMREKVTNIRDTAGNVIWAEANFPTETPTVFEVIGTTPVTDPFGTVIAFNSSMKRSENQQIGQ
Ga0214917_1000027423	F001900	GGA	MLVQAASGLERLMVGNRNNALLKDSTVAQISAYMYYNAQVISKLTTNKAFQSKFSSVIFAQIDKDFGEYIDALARTRPKSLHHVYEWKKVGNKTARLFKLNLLSQEGLSFKVGYQFTPSKSFVPASKHSRRRHVFANKAEIMENGTPLVISPKHAERLVFEVDGGTVFMPKGQSVKIKRPGGTAATNQFTLAHGKFFSSNLVGLSIRKSGFQRIFNAGMAKSLRIPTNIKRVQFSFSPNAIRAQADAALSQSFGGVL
Ga0214917_1000027424	F000258	GGAGG	MTANYKLDAMLELRKFLWNELKTRNIFDDEDYWSDNLNENIIPIVPVQQTAEMNQFLSGKKHIVYDKIGMSYENNWMICCEQILFTIYSTDFAEINEIRNYMTDQFRRMDESARDINYWSGLSDKFKFHSIFVADISPTAPSEELQGFFSTDVILEIKYSRILDGQGRFL
Ga0214917_1000027427	F005479	N/A	MKKKEHDEKKFQASLKGVDIGNYKEEEKSTSFDDVRLRAAGINASSEDVVSLQGAFAAQAGFGIGAGLGYSKE
Ga0214917_1000027429	F005053	GGAGG	MAMYLPRGSVLWIEAKDLLATPPGTTKIWNKVTEHNRSPVELSIDRIERSVRTSNGTLRKNHIADKRSFSMSWDMLPSYRTLTVDGGWGAEDLRQFYLSDDGKKTFNIRINLAKAGADQSSSGYESYTVSFTSCNFTVVKRGLQPHWNVSLSLNEV
Ga0214917_1000027442	F002501	GGA	MMKCQKCGGRVFVDRVFSQKLHVELFCILCGKRWMINKETSAFGKWLEKTDSDHAKNYSISS
Ga0214917_1000027443	F001464	N/A	MARKNRQRSRKKLQYFFINGKIHKVIKSTRAKDELIAWCYPDKKRMLYSYHLIEKNMENAYSVKDAAALLNRHKVTVEEYILTGKIKEPQKVYPISNPESKWFKFMLSESDILDIHQFILDAGYIRDLPSKTELQAILKHNLILYTKTNDGSFVPVWKAE
Ga0214917_1000027450	F004006	AGGA	MTENVEGLVQSISINQILVSILEEHGKITVPTLKFLEAANIDKELVIDYDEDGPSFTFSLRDKNEQQ
Ga0214917_1000027462	F038675	N/A	MKLYESQTWLYRRYVVQKKTVTEIAEECKVSAMTIQRHLEKFGLIRKR
Ga0214917_1000027468	F000376	AGAAGG	MSIYQDKAKECKCCGKHVPLPTTLKEYNGTMLCPTTFSNVVEYKRIWKASGSRPPGSIRKHFSDYVQQLVEVTIDKNDDGTIQ
Ga0214917_1000027471	F078287	AGGAGG	MPYNVKQGAAGCKGWAVVNDKGELKGCHPSKSRAVAHQRALYAATANEEKMKDKKRIL