NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000002

Scaffold Ga0214917_10000002


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)330017
Total Scaffold Genes436 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)282 (64.68%)
Novel Protein Genes22 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)21 (95.45%)
Associated Families22

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001443Metagenome / Metatranscriptome693Y
F005300Metagenome / Metatranscriptome405Y
F006141Metagenome / Metatranscriptome380Y
F008995Metagenome / Metatranscriptome324Y
F013393Metagenome / Metatranscriptome271Y
F014734Metagenome / Metatranscriptome260Y
F016150Metagenome / Metatranscriptome249Y
F016374Metagenome / Metatranscriptome247Y
F024263Metagenome206Y
F024952Metagenome / Metatranscriptome203N
F029985Metagenome186Y
F030372Metagenome185Y
F030663Metagenome / Metatranscriptome184Y
F042790Metagenome157Y
F044299Metagenome154Y
F046245Metagenome / Metatranscriptome151Y
F051684Metagenome143N
F053886Metagenome140Y
F056408Metagenome / Metatranscriptome137Y
F067390Metagenome125Y
F089835Metagenome / Metatranscriptome108N
F102401Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_10000002101F053886AGGAMSRTLIWVLSFSVLGPVPEYGEQAKFKTQAECEQARVQKREEFRAQNKQIVASCHLSTK
Ga0214917_10000002173F067390AGGAGMGRALKIQKNNVGSGSTVTGNPPVTTYNQTILTDAGFPNFGSLTSPATPYNSANTFNSDQFVGVVGGIFTTSTPSATFPEIFCLVNIVLADGTSTFDIASEYAGRIIRQKGSHKFLVAYTYASTADEAMIIGQAYQVASVGTTNWAACGGSADTAVGDIFTATAVGSGTGTVYPVGQCVLSNTATPAAGNMSIEYSVGDSAAVYASYITNKWIRDWNGMTYGTYSSSNLGENIYSSENFYVTNFFTDEGTVTWSGAEIINGVEAPNGSLQLAQVVNVTS
Ga0214917_10000002198F024952AGGVQKLVKIMTTPQYQTYAETMSRLAERHPPAPTPAEVRNQPVMIPGVITQTTNLFQPVAVADLNKESK
Ga0214917_10000002199F008995AGGAMAIQVVNAVSNVAWTTDKVEIATTTANVTFQVLVVQLTYVQANGVPANATMTTPTGNLYANAIVVPGNTVQQYYVGAGNYLNIVTGSGFSATALGTATSATAGSEGI
Ga0214917_10000002227F042790AGGAMNIKLRAAFQTAGILAVICTVSVGVQLLLTGLTADEISKILSVGSITLLVYCMYQLVLSRLEYTQKVNEIVKK
Ga0214917_10000002288F006141GGAMIVEIFLYGFISAFGWWTATHYVIEPHFPPSIEKKAEQK
Ga0214917_10000002290F005300AGGAGMSKRIGPITLDSEAADRITVLTLKEQRAHLKKELTEWKKDPRSDSNPGGKWMHPEDVAINTRMIESLNTVIKYFGE
Ga0214917_10000002294F024263AGGAMSVKIEASDAMLPSLDSLKTTALPMHKLYFELSDVDTWYTIMREARAQFGKNWRSQAHVKRRLEHANLWRLGGSTERVWFEVPDPKFGTWIAIKHAVRQVEPTGK
Ga0214917_10000002315F029985GGAMTKIRAIYRIVILVLLLILCASAMVSSSPMYGGDRPSVARELPAREREVRLNHGVAECVRTAWIGDVNNRIVICVEYRLKKEVK
Ga0214917_10000002323F016150AGGAGMTEPKKSSNPFINMANDAKKKNQELHPGLGKAPKKQGPKPNSKGFGGANVTRRSARGG
Ga0214917_10000002336F013393AGGAGMRHVAGFSNSTRIRFIVNGFGMYGTINDIYTKTATVTHGAALRLAIQKLAYDRRRSSFTGAGRPVGVGITHEGIDVQITLMAN
Ga0214917_10000002342F102401AGGMKHFLIIVAILSVTAWAQVPVHVSKDLHTRAHQPRVPRVKLLRSNPHRFTAIRLQGTNPYDAPDDEFLCSSLARRPKVAPPTDQPDDELSAYVQVRLAVARARAMARYRELHT
Ga0214917_10000002352F030372GGAMNQQTKQLAEQAGFVLDDLPDSVLQPLETFADLLRTANTREVIALCASTINNNINEQKQKTKHRWEIVEALVIVTALIAWATWWYTQSHT
Ga0214917_10000002376F051684AGGAMKFYAWFVKHQDVISGFVSGIALMTAADYFSRGDMAYGCLSLFVSVANLLLSGKKIGQNLEPKE
Ga0214917_100000025F014734AGGAMAQEESAKGVFIEKMLFALLPLIIAGVGYLLNAVSTLNHQITVLESKVSLVVTSDNKQASNTSSELAREKLRQDLTAEIQKNRDSIQQNREHISIHEEKLRQLNQKVGK
Ga0214917_1000000259F089835AGGAMRLSPLDERMNADIDALIAKLEAAKTSRTYLQRASLVGKVAEQCQSYEFYWEDRLYSLMD
Ga0214917_1000000261F056408GGAGMDEAEIAVNKRIKQLMGQTLDDKFKETWSTMTPEDLEKFVKHFAELLIRDCADTAYRFDGLTLGQGYTIAKHIKKNYEVES
Ga0214917_1000000262F044299GAGGVNQISQYLVSIDRPPYVNGRRVGQATPCVSYGEPAWFISFLDGYMHASDPVFTDEDGLNGAPSVREYATNLGYEPCTN
Ga0214917_1000000263F030663AGGAMYELIFTFLIVTKAGVPGFHIERMSQFRELEDCEKTKTSMVVYMDKLVRENKMFPGVFECQKVQR
Ga0214917_1000000264F016374AGGMNKEITLTPTGGRFYRAMTFHWVTVAVLMPPLAIAMIAAILNPFWFRDSMFNFVERKINEFTRWRNNVKYRIYLNCDPVVWHTLKGDLK
Ga0214917_1000000288F001443AGGAGMPMYETTVRTPQGEEKKRIYAATPQEAKKLFEQQYGGPRAVPYIPHIIPS
Ga0214917_1000000290F046245N/AMLDYVVTFFAVFATDLIYVYFVRSIQDNRPMMAAWWSVAVTFTASVAVINYTADHWALIPALLGAYCGTLFGMWIKQRINSD

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