NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228702_1004775

Scaffold Ga0228702_1004775


Overview

Basic Information
Taxon OID3300022748 Open in IMG/M
Scaffold IDGa0228702_1004775 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6500
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003267Metagenome / Metatranscriptome496N
F004837Metagenome / Metatranscriptome421Y
F012656Metagenome / Metatranscriptome278N

Sequences

Protein IDFamilyRBSSequence
Ga0228702_100477510F004837N/AMTQDEYLTAQKHRHYWEQYQAHLYMRLSPEAVGDLQTILVAHGRPNTNWWCADCVKSALSYIYEQADTFAQENQQTVTHALTSSSKQ
Ga0228702_10047753F003267N/AMKLVHYYHIYCGGGGQWQLILNQHMMALCNYGLIEQLDEIRVGIVGPPEQRKAVKEILEGSLIAHKVKVVVTRTNAYEQATLTEMYKASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELQNVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRKLGEPVREHRWQAEHWIGKAEGMTVYNSCKGWPAPDKFIITF
Ga0228702_10047758F012656N/AMDSLMMVITTLCDCIGAIDDSNAPNGYAVKMKIVDKISDLIDKIEY
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