Basic Information | |
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Taxon OID | 3300022747 Open in IMG/M |
Scaffold ID | Ga0228703_1009852 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3629 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9263 | Long. (o) | -83.4268 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006112 | Metagenome / Metatranscriptome | 381 | Y |
F010760 | Metagenome / Metatranscriptome | 299 | Y |
F018539 | Metagenome | 234 | Y |
F099293 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0228703_100985210 | F006112 | AGGAG | MSYTLYIYKADKRYKTGERLYSTTVWPVKDDNAMRRTVAELFPLYRTEDGFRFDWTPSTKKVRNLMTGVEIEIPHDTPRSCDPSSELYWSM |
Ga0228703_100985212 | F099293 | AGGAG | MSDYKQRLDNALIQLQYIIDEQYEDNDAVQTAFNNLAIVLDGEYDE |
Ga0228703_100985213 | F018539 | AGGAG | MSKIYTANTAKAKLIYVKNKETYKIIIAFNVHKKIKDNGDIVHIFPVQKQCNYVSGDLAYETLQKDTEYVLSQAKKQLRTDNIEFV |
Ga0228703_10098524 | F010760 | AGGAG | MLDISKVVKVYNGRIGCMCGCNGKYSYTEDGAKNYGPGYDVTDKINERSVRIITKKILANPNVVFESDYAYVEDRAKNKMQMVVFKKEQA |
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