Scaffold Ga0228701_1003914

Overview

Basic Information

• Taxon OID: 3300022746
• Scaffold ID: Ga0228701_1003914
• Source Dataset Name: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7647
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011666	Metagenome	288	Y
F056612	Metagenome / Metatranscriptome	137	N
F088884	Metagenome	109	N
F091645	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_100391410	F091645	N/A	MDFTALFPEHVEPNRGPGISYCVAPNARMFDYELVMPGERRLRGCLRAINKKDAERILQNRHPDATKIDIGEGRKIVSGPPKA
Ga0228701_100391415	F011666	N/A	LRPALILRVWQYLLLKPLMQWHPIERTQESQFSEVATAKMLEEWLKQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQKSIIQSQ
Ga0228701_10039144	F088884	N/A	MKLFSPEHAGKHVWQVADAKTRSVSYTANNSTSPPPDAVHGHPLGRYDSDGLYWTFIPMAGNEDPNHPLTSRFVKHPLAEQEQRQAIKEKVWGRLDSFGSYKETEF
Ga0228701_10039149	F056612	GAG	MYKTESTFESAFIGQISLFANKNKKHEKSPDKTGTIELELSEAMKLAEYLTAHPGEQNYAGKTVVKLAINAWDKRSEGGTEYVGGTVWAKKPEAGVNDLPVF