NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228701_1000041

Scaffold Ga0228701_1000041


Overview

Basic Information
Taxon OID3300022746 Open in IMG/M
Scaffold IDGa0228701_1000041 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)166547
Total Scaffold Genes310 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)228 (73.55%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014494Metagenome / Metatranscriptome262Y
F034151Metagenome / Metatranscriptome175Y
F036693Metagenome / Metatranscriptome169Y
F044442Metagenome / Metatranscriptome154Y
F078629Metagenome / Metatranscriptome116Y
F085212Metagenome / Metatranscriptome111Y
F101135Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0228701_1000041197F036693N/AMAYNKSMKPRDLVAKDLRTPKYRMRVVESKVKYTRKAKHKKESYEREQSSLQG
Ga0228701_1000041208F014494AGGMAVTKHFECNSCEATGKIVVKGDDHNLSDIVYCPVCSADIYEEEEFDEEQ
Ga0228701_1000041247F085212GGAMRVLQETTKDWSQKVSNHIYYVTDDKCKLVAFYNVDTKTTKKFSKPLPFYTKYRTFKELK
Ga0228701_1000041254F034151N/AMKARLSPNLISFVTVRRGDWILKVSVYKNKQIMVVAQHCFDMETTHIKFFQDQNAAADFIEQLVIEE
Ga0228701_1000041269F044442AGGAMLKFAALSLAQKRFVVATLEAAPQYKKSPQITLKECAAIYYEFRDQRTGSKGEKIGYPNWLFAANKVERGVYQLPVPTADELKAFHKEVADKAAPVAKAKAKVAKLAKAKTVKVKSTPAAKAVEKETKSDLNRLQKVIDESMAYDDETEDFNQILRENGIEV
Ga0228701_1000041300F078629N/AMSDTIAIVQPDEALQVAVSEGVLTLSSSNVANPAVVESMSDIADVDATIKVNGSILVYKTTTNKWTSTTTLDAQNMEGGEF
Ga0228701_100004189F101135GGAGMKDITIEQYCDGWSVEVDGKRFRWDHNDEDMGTEGIKKLLEHLGHTVTVEECY

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