Basic Information | |
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Taxon OID | 3300022746 Open in IMG/M |
Scaffold ID | Ga0228701_1000041 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 166547 |
Total Scaffold Genes | 310 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 228 (73.55%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F014494 | Metagenome / Metatranscriptome | 262 | Y |
F034151 | Metagenome / Metatranscriptome | 175 | Y |
F036693 | Metagenome / Metatranscriptome | 169 | Y |
F044442 | Metagenome / Metatranscriptome | 154 | Y |
F078629 | Metagenome / Metatranscriptome | 116 | Y |
F085212 | Metagenome / Metatranscriptome | 111 | Y |
F101135 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0228701_1000041197 | F036693 | N/A | MAYNKSMKPRDLVAKDLRTPKYRMRVVESKVKYTRKAKHKKESYEREQSSLQG |
Ga0228701_1000041208 | F014494 | AGG | MAVTKHFECNSCEATGKIVVKGDDHNLSDIVYCPVCSADIYEEEEFDEEQ |
Ga0228701_1000041247 | F085212 | GGA | MRVLQETTKDWSQKVSNHIYYVTDDKCKLVAFYNVDTKTTKKFSKPLPFYTKYRTFKELK |
Ga0228701_1000041254 | F034151 | N/A | MKARLSPNLISFVTVRRGDWILKVSVYKNKQIMVVAQHCFDMETTHIKFFQDQNAAADFIEQLVIEE |
Ga0228701_1000041269 | F044442 | AGGA | MLKFAALSLAQKRFVVATLEAAPQYKKSPQITLKECAAIYYEFRDQRTGSKGEKIGYPNWLFAANKVERGVYQLPVPTADELKAFHKEVADKAAPVAKAKAKVAKLAKAKTVKVKSTPAAKAVEKETKSDLNRLQKVIDESMAYDDETEDFNQILRENGIEV |
Ga0228701_1000041300 | F078629 | N/A | MSDTIAIVQPDEALQVAVSEGVLTLSSSNVANPAVVESMSDIADVDATIKVNGSILVYKTTTNKWTSTTTLDAQNMEGGEF |
Ga0228701_100004189 | F101135 | GGAG | MKDITIEQYCDGWSVEVDGKRFRWDHNDEDMGTEGIKKLLEHLGHTVTVEECY |
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