Scaffold Ga0228701

Basic Information
Taxon OID	3300022746 Open in IMG/M
Scaffold ID	Ga0228701_1000041 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022746 Open in IMG/M

Scaffold ID

Ga0228701_1000041 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	166547
Total Scaffold Genes	310 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	228 (73.55%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

166547

Total Scaffold Genes

310 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

228 (73.55%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9255

Long. (^o)

-83.5226

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014494	Metagenome / Metatranscriptome	262	Y
F034151	Metagenome / Metatranscriptome	175	Y
F036693	Metagenome / Metatranscriptome	169	Y
F044442	Metagenome / Metatranscriptome	154	Y
F078629	Metagenome / Metatranscriptome	116	Y
F085212	Metagenome / Metatranscriptome	111	Y
F101135	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228701_1000041197	F036693	N/A	MAYNKSMKPRDLVAKDLRTPKYRMRVVESKVKYTRKAKHKKESYEREQSSLQG
Ga0228701_1000041208	F014494	AGG	MAVTKHFECNSCEATGKIVVKGDDHNLSDIVYCPVCSADIYEEEEFDEEQ
Ga0228701_1000041247	F085212	GGA	MRVLQETTKDWSQKVSNHIYYVTDDKCKLVAFYNVDTKTTKKFSKPLPFYTKYRTFKELK
Ga0228701_1000041254	F034151	N/A	MKARLSPNLISFVTVRRGDWILKVSVYKNKQIMVVAQHCFDMETTHIKFFQDQNAAADFIEQLVIEE
Ga0228701_1000041269	F044442	AGGA	MLKFAALSLAQKRFVVATLEAAPQYKKSPQITLKECAAIYYEFRDQRTGSKGEKIGYPNWLFAANKVERGVYQLPVPTADELKAFHKEVADKAAPVAKAKAKVAKLAKAKTVKVKSTPAAKAVEKETKSDLNRLQKVIDESMAYDDETEDFNQILRENGIEV
Ga0228701_1000041300	F078629	N/A	MSDTIAIVQPDEALQVAVSEGVLTLSSSNVANPAVVESMSDIADVDATIKVNGSILVYKTTTNKWTSTTTLDAQNMEGGEF
Ga0228701_100004189	F101135	GGAG	MKDITIEQYCDGWSVEVDGKRFRWDHNDEDMGTEGIKKLLEHLGHTVTVEECY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0228701_1000041

Overview

Ecosystem & Geography

Associated Families

Sequences