NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228699_1000687

Scaffold Ga0228699_1000687


Overview

Basic Information
Taxon OID3300022743 Open in IMG/M
Scaffold IDGa0228699_1000687 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22552
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (61.40%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9363Long. (o)-83.5573Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018683Metagenome / Metatranscriptome233Y
F066582Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0228699_100068725F018683GGAMTIKRFNQNQKFRIIVGDACFYATANQIRYGVGDFAKCNAATQKALDALEFQRSGSDVLAFSTGLAGTWEGMSIQLTVA
Ga0228699_100068756F066582GGAMTTQHYRRLEDGAMDDIDAAVWSGDLFHNRENIAEFRKMMARWERGLKECEDILTELEKENEQTN

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