Scaffold Ga0224562_1004664

Overview

Basic Information

• Taxon OID: 3300022733
• Scaffold ID: Ga0224562_1004664
• Source Dataset Name: Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1047
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.0431
  • Long. (^o): 13.617

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034490	Metagenome / Metatranscriptome	174	Y
F048502	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224562_10046641	F048502	N/A	DALSVPYQTDASLKRPTPLKLIEDGTGYKLYAGRKWVAVKLE
Ga0224562_10046642	F034490	GGAG	MDLTQSTSTAAAKPAHSVVPQPESVANVRSSDVRNNLRNAVRNDANSAHRSSGFGLPCANCRLYYPANLDVCPACNSTERVSARVAPAIPKIQTAAEPVPDNAVVEQEREAFLKQFKSQLFAAHAEVSSAPAICTLGEHHIEGAEAATICKPCYERLQERVDVCEAVLHIDLKEAAQIIYDAVWADPSDPSKTYTNAASALITELRKRSGVSSLLGPFQPLGN