Scaffold Ga0224566_100556

Overview

Basic Information

• Taxon OID: 3300022728
• Scaffold ID: Ga0224566_100556
• Source Dataset Name: Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2967
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.044
  • Long. (^o): 13.617

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001759	Metagenome / Metatranscriptome	640	Y
F002337	Metagenome / Metatranscriptome	569	Y
F008209	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224566_1005561	F002337	GGAG	MNLAIVLVVTAAAALVIILRLAVKQSLQVKESSGLSVTIRPIDVVAFRNLTNNAEDDYLRRRLPPGDFRQVRRERLRAMAAYIQTAAMNAAVLIRVGEAALATGDPRIAQAAGQLVNDALLLRRNTTLALARIYIALAWPNSSFVAVRVIDRYEQVSGSAMLLGRLQNPAAAVRLS
Ga0224566_1005563	F008209	AGGAG	VKRLLFVVAATLMFLSTLAVPNLAHADGGAGTTSCGGGNGMCKP
Ga0224566_1005564	F001759	AGGCGG	MTLKSALQDLRETTLVAVSGLLAKLSYLASLRRKEGGYGHWGMALVHGEEASDRALKTAHTEVLSNVLRTPISELEEDLRESSQGEETAGAYVEGMREQFNELLPSPQDAASARHLNSVLIALSRLEKSRKPATPSTS