Scaffold Ga0224566_100059

Overview

Basic Information

• Taxon OID: 3300022728
• Scaffold ID: Ga0224566_100059
• Source Dataset Name: Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7347
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.044
  • Long. (^o): 13.617

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012243	Metagenome / Metatranscriptome	282	Y
F016839	Metagenome / Metatranscriptome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224566_1000596	F012243	N/A	MSALSYIPSFLLIALLAILIRRRAYTFLPYFFAYTTFAVIADFARFLAHNYQHPYYVTYWTTEAGYDVLGILVMYEATRGVLGNLSQSWWARIAFPAILLAGLGLSLARATATPIQLGRRVAYYILVGEIAVRFVQVFVFSGLVTLVPLIGLRWRQYPFGVATGFGLYATVSLLLTTKFSDFGTRFIFLWGVTSLVAYSLAVLIWIWFFSVPQKVEQSSSGLSAPSPGDLKQYKDALRRM
Ga0224566_1000597	F016839	N/A	MRYGECARFMFSIVFTWLIVAWGAIACIYMLRCAWSRFPKRDVDDVIPFLYPVDISLAESLLDPASEFEYRWNLSPRQFRAAQRKRMRLYLELTRRMAHNSRVLVEYADAEKNSPDPRRASLASALQEKAIEVRIYALLAGIKLRLCLFLRSDILAVIPALAHLRTTCDIDGLETYSALKTVAAAAFVQLPPEELDSLTRNL