NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242672_1040394

Scaffold Ga0242672_1040394


Overview

Basic Information
Taxon OID3300022720 Open in IMG/M
Scaffold IDGa0242672_1040394 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)749
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080064Metagenome / Metatranscriptome115Y
F093895Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0242672_10403941F080064N/AERCERSLPEMEQSMTGRESQAMSAEQSAGKAGREVKGAEQFEPKAEGQVSCRK
Ga0242672_10403942F093895N/ACRPYNPQKSLRKFGFGLIRFRSPLLSESHLLSFPPGTEMVPELLVPTFSTSHRSGIAPCSTLAFCAIHGVLRGLHRMPALLADFSAINPLALCPAHELLRARHLAFCVEPGLLRARRFSPCVEPGLLRVQPSRSVPSPDRSVLFPSRFASLTDCSVVDAWLLVSRPERSVLLTSTLSCSPIARCATLCASHRARITSCTTLDLPPWAQIAPRL
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