NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242661_1051796

Scaffold Ga0242661_1051796


Overview

Basic Information
Taxon OID3300022717 Open in IMG/M
Scaffold IDGa0242661_1051796 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046539Metagenome / Metatranscriptome151Y
F092660Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0242661_10517961F092660N/APASAFAGLDGINWHCEQDYISAHGRLELTSNSKFCTFIDKLECKVREPGKLPIYYLLECDRNRRICEAVSAKLLRGEPWLVKQEYRITEWDAGHVSASMKDPPYQCLVAGLRIDLDDREVVFTETYTKSIENDAFCVPENVGHTTTYKLENY
Ga0242661_10517962F046539N/ALTYDDLVELARLCARNSRIATSRDVADELWRMAREYQAQAANLGSAPELGDEPPVWNSAR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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