Scaffold Ga0242661_1006815

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0242661_1006815

Scaffold Ga0242661_1006815

Overview

Basic Information
Taxon OID	3300022717 Open in IMG/M
Scaffold ID	Ga0242661_1006815 Open in IMG/M
Source Dataset Name	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1521
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003874	Metagenome / Metatranscriptome	464	Y
F010282	Metagenome / Metatranscriptome	306	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0242661_10068151	F003874	AGGAGG	MSLKHLIIGTVLAFCSFVTQAAAQKNELTGMVGRTFIANQGILGAPSYDPELRFGKGFTFEINYTRRLMGAPFWSLGVEVPFLDDPDEHLHAAQNLIPGKYSSIFITPAARFNLFPGQGVSPWVSFGGGFGHFGESSRLEFGEPNPGKTSSTVGVIQAGIGLDVKIIGRFSLRGEARDFWSGVPDLNVNTGKSRQHNIFVGGGVVFHF
Ga0242661_10068152	F010282	N/A	AAMLYSHGTALLNGNTMARSSALFSGDLVQTNADSVANINATGSSILVLNDSLVQYEGGGVKLEHGGVSISTSKLLATRVGNVTVSPVSGVWTEFDVRDVDGRVQIAARKGDLSVSDDAGTITLAQGQETTRDDSQQTEEQKKKRKKKSGSCIYSCHGSDF

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