Scaffold Ga0248169_121732

Overview

Basic Information

• Taxon OID: 3300022602
• Scaffold ID: Ga0248169_121732
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: U.S. Department of Energy (DOE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3847
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030333	Metagenome	185	Y
F089853	Metagenome	108	Y
F100256	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0248169_1217326	F030333	N/A	MAIDRNPELTVPVRTYSHYAECEPWLLANIGEWNAAWWRDFPDMAMSVALGQVPQPETYWFTCEQDALMFKLKFV
Ga0248169_1217327	F089853	AGCAGG	MQIASITPPAIKPYLGWQPCIDWCSQNCTGPWLFISEGVFEFELDADYVMFMLRWG
Ga0248169_1217329	F100256	N/A	MIRVSTKDPAFNQAWCNAMRALPVHELERPRQYGQRWREAYRCRVDVSENGLIAGSGWPEHVYIFDRDEDYTWFMLKWG