Scaffold Ga0236341_1000441

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1000441
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25957
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (66.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014494	Metagenome / Metatranscriptome	262	Y
F039621	Metagenome / Metatranscriptome	163	Y
F073096	Metagenome / Metatranscriptome	120	Y
F082571	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100044116	F039621	AGGAG	MNAKTIVLAAVLIVGLIILMPVATIWSLNTLFPMLNIPVTFETWCASLVLGGVVGGSTGLSFKK
Ga0236341_100044131	F082571	GGAG	MIVAGWIVVGFFSAIGWWSANHYVIEPYFPEKIVKEKPLKETNE
Ga0236341_100044134	F073096	N/A	VQSVAQTQRTTNMKIAYLLPAVMLCGCSVLSTVMPIDHDPVMFNNLVSTKIAVEKLNCDDKNWADAETKIHQLKVYTDLRGDPQAKSIAQLEEAIGKAKASNNKLFCESILKVNKTRIDVVADAWKGR
Ga0236341_100044144	F014494	GGGGG	MTTKHFECEECGVEGKIIVKGSDTQLEDIVYCPVCSGDIYEEEEFDEDE