Scaffold Ga0236341_1000164

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1000164
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40453
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (79.79%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F010245	Metagenome / Metatranscriptome	306	Y
F013757	Metagenome / Metatranscriptome	268	Y
F044486	Metagenome / Metatranscriptome	154	Y
F068748	Metagenome / Metatranscriptome	124	Y
F071946	Metagenome / Metatranscriptome	121	Y
F074569	Metagenome / Metatranscriptome	119	Y
F085611	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_100016416	F085611	AGG	MNWEFYEVWSIDEDGHEDLVDTTKSLKEARQIAQSNLTEYYAECVIYAEDPNGDLVEVERVK
Ga0236341_100016420	F074569	AGGA	MKEQLLALAYEKEDEEFGSSERDEFDCLIALIEDGTIDTFEELAKYGVKR
Ga0236341_100016424	F068748	GAGG	MITPDTLKTLISFTAPALTRAAKDNGYKGPAFSSCKFLGITNGGQFCYMGVFLVGDGTDSTKVFLTHTGSRVIADVQLTDWA
Ga0236341_100016428	F044486	GGA	MFNSILKWAGCATVCAGALCTSLRIDPLNIYFLNAGALLYLIWSVRIKERNLIVVNAVLLGLYVVGLLYNK
Ga0236341_100016431	F013757	AGGA	MLTNCVAKAKLVFNKKLKSYKLVVAFNAHKRITPQGIVKYAFPTQAKCAYVSGDLLAENLAQELSTVLPSVYAQLRTNSVEFVE
Ga0236341_100016432	F010245	GGA	LDFGCYNYGMVKRTARKDSNFVIYVARHNGEEYIGLTRKGTVTVGKAVKERWRKHISRAKHEERDWELYRYIKAGNWSEWEHEVITVIRGRAEAYAYERELVKLIEPSLNDQYM
Ga0236341_100016463	F002052	AGGAG	MTRKFAFTFTIECGGEGEADLARVEELIDLSMQDLVFDESFVEALDEKVSITIQVLPQIGKIIG
Ga0236341_100016470	F071946	AGGAG	MYNIVENPIPKTGLFATPESFEQLMEYCQRFNGQERIIAITVATMALNLAHREVEEKILSKEIFAQ