NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1000016

Scaffold Ga0236341_1000016


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1000016 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)95668
Total Scaffold Genes157 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)127 (80.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003439Metagenome / Metatranscriptome486Y
F009065Metagenome / Metatranscriptome323Y
F019636Metagenome / Metatranscriptome228Y
F070899Metagenome / Metatranscriptome122Y
F096495Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_1000016127F096495AGGAGMALIRGKEVKESPDQTPANPKLWNMITMQARTKFAKYPSPAAAHWVHAKYSQMGGQFVKNKGQVDPRFRDYVQEAKDKQEEQQKKKVTKPIGKNNINGESFKRF
Ga0236341_1000016130F009065GGAGMSTEKKGRQELIFKKQAEPWVKPFPEKVAKRVAKIPTTELEMWVENSLYEIGRCMSMFSKHRSQQFLDEALAGAEALHAVVDELHRRSTR
Ga0236341_100001648F003439GGAMTVNNSRSMNVSLDEGATDGKYRKARPNTTVIPGLGDQIVKQERAGLHPYMNYGFINSEEANKVNPGK
Ga0236341_100001649F070899AGGMNNDPGLLTDSTGDGMAGAEDVRLDTQRDLRKTYYNGSKPCIECGMTLNPVQSLHTDTCPNCTRRKQAKHLKGRMA
Ga0236341_100001651F019636AGGGGGMTGRMSDGVYSRKPWQAPPEAAYPPQAYIGPFASNQERLLSQSLAANLMTGAELQEYVRPPLPQVVLFPERYGYTDTELTLEDIVQLPGRAQQRVESDFSQTPNTTESSSRNDLGGAV
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