Scaffold Ga0236341_1000001

Overview

Basic Information

• Taxon OID: 3300022591
• Scaffold ID: Ga0236341_1000001
• Source Dataset Name: Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Laval University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 229288
• Total Scaffold Genes: 273
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 193 (70.70%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location

• Location Name: SAS2a, Kuujjuarapick, Canada
• Coordinates
  • Lat. (^o): 55.1491
  • Long. (^o): -77.4866

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003080	Metagenome / Metatranscriptome	508	Y
F009462	Metagenome / Metatranscriptome	317	Y
F015331	Metagenome / Metatranscriptome	255	Y
F015338	Metagenome / Metatranscriptome	255	Y
F024559	Metagenome / Metatranscriptome	205	Y
F037029	Metagenome	168	Y
F063276	Metagenome	129	Y
F066711	Metagenome / Metatranscriptome	126	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0236341_1000001230	F037029	N/A	MTFRNWCNDKWYEHRDELESYGESLPYTAQEYFAKYKYWLKREYKHQRNDNV
Ga0236341_1000001257	F066711	AGGA	MAKVNRTKWYKFVGDVYELYEQDRNAPPSERTHTDCGWRLRSYKYGGNSTASFKGPLVESLEQRPCPLKSGQPGIYILRDSIFPNGFYIGKGKDISDRIWKHGVKLDGTDKWNKGVGTTEYFAKYRKLRLEKGLTNFDDVEIAFWFTEEFDALEDQLMGAYEAKYGMIPFCNSTEESLFQVWDI
Ga0236341_10000015	F015331	N/A	MDIYADKEYWTSLKWPAAPDDADYSVFESYCTGRVLLLGSTRLLLPLATEAWDLEPKYADPKIKNKDWFNLDTHWDTIIVDGALAFGMEFTHRLLPIVLANCNRFIARAFLNPNWPTKYACYFPKAHELTPQPEEHPINEVYTFYIWNKKQS
Ga0236341_100000152	F009462	AGGAG	MELHESVRDSYKEMVIKESEGFRLTLKKHEVLSPKGLFSIDMLQESLKDGEVVSSQEYNFFMTKEECQALAYGLTA
Ga0236341_100000154	F024559	GGAGG	MINALFKLILGITLIVFVIVVGPLAGIWSLNTLFPVLHIPYTWETWLAFLLLFGSATGLRFGKK
Ga0236341_100000156	F070810	N/A	MSDGFTHMVQVPWHSQSGKWWNEACADVIEVFGLPGDRFTSYAKMESMEFYFKSNRDAELCKILLSDKI
Ga0236341_100000157	F063276	GGA	MQDTSKRQDLDFYLVLVLGFLGMVFAIYWNYTHPHVTVRYDCSIAEISPDYPVQVKEGCRKLRAKYFEENLQKPK
Ga0236341_100000159	F003080	AGGAG	MTTAKDLTDQLINRAKNLQEFIVEREFNEIPLNGVVKFDVQHSKGHPARIFVHALTQQEAEEMVNEWFEEAND
Ga0236341_100000173	F015338	N/A	MALKNGKPNPLNYFDLRRVEFPAPHFKYTSLEKYSPMLAKNLDYWIKTNLNHRYYIGQSIALDSTNTIIYNTRIGFESEKELSFFKIACPHLQMR