Basic Information | |
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Taxon OID | 3300022591 Open in IMG/M |
Scaffold ID | Ga0236341_1000001 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Laval University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 229288 |
Total Scaffold Genes | 273 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 193 (70.70%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter |
Source Dataset Sampling Location | ||||||||
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Location Name | SAS2a, Kuujjuarapick, Canada | |||||||
Coordinates | Lat. (o) | 55.1491 | Long. (o) | -77.4866 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F003080 | Metagenome / Metatranscriptome | 508 | Y |
F009462 | Metagenome / Metatranscriptome | 317 | Y |
F015331 | Metagenome / Metatranscriptome | 255 | Y |
F015338 | Metagenome / Metatranscriptome | 255 | Y |
F024559 | Metagenome / Metatranscriptome | 205 | Y |
F037029 | Metagenome | 168 | Y |
F063276 | Metagenome | 129 | Y |
F066711 | Metagenome / Metatranscriptome | 126 | Y |
F070810 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0236341_1000001230 | F037029 | N/A | MTFRNWCNDKWYEHRDELESYGESLPYTAQEYFAKYKYWLKREYKHQRNDNV |
Ga0236341_1000001257 | F066711 | AGGA | MAKVNRTKWYKFVGDVYELYEQDRNAPPSERTHTDCGWRLRSYKYGGNSTASFKGPLVESLEQRPCPLKSGQPGIYILRDSIFPNGFYIGKGKDISDRIWKHGVKLDGTDKWNKGVGTTEYFAKYRKLRLEKGLTNFDDVEIAFWFTEEFDALEDQLMGAYEAKYGMIPFCNSTEESLFQVWDI |
Ga0236341_10000015 | F015331 | N/A | MDIYADKEYWTSLKWPAAPDDADYSVFESYCTGRVLLLGSTRLLLPLATEAWDLEPKYADPKIKNKDWFNLDTHWDTIIVDGALAFGMEFTHRLLPIVLANCNRFIARAFLNPNWPTKYACYFPKAHELTPQPEEHPINEVYTFYIWNKKQS |
Ga0236341_100000152 | F009462 | AGGAG | MELHESVRDSYKEMVIKESEGFRLTLKKHEVLSPKGLFSIDMLQESLKDGEVVSSQEYNFFMTKEECQALAYGLTA |
Ga0236341_100000154 | F024559 | GGAGG | MINALFKLILGITLIVFVIVVGPLAGIWSLNTLFPVLHIPYTWETWLAFLLLFGSATGLRFGKK |
Ga0236341_100000156 | F070810 | N/A | MSDGFTHMVQVPWHSQSGKWWNEACADVIEVFGLPGDRFTSYAKMESMEFYFKSNRDAELCKILLSDKI |
Ga0236341_100000157 | F063276 | GGA | MQDTSKRQDLDFYLVLVLGFLGMVFAIYWNYTHPHVTVRYDCSIAEISPDYPVQVKEGCRKLRAKYFEENLQKPK |
Ga0236341_100000159 | F003080 | AGGAG | MTTAKDLTDQLINRAKNLQEFIVEREFNEIPLNGVVKFDVQHSKGHPARIFVHALTQQEAEEMVNEWFEEAND |
Ga0236341_100000173 | F015338 | N/A | MALKNGKPNPLNYFDLRRVEFPAPHFKYTSLEKYSPMLAKNLDYWIKTNLNHRYYIGQSIALDSTNTIIYNTRIGFESEKELSFFKIACPHLQMR |
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