NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0236341_1000001

Scaffold Ga0236341_1000001


Overview

Basic Information
Taxon OID3300022591 Open in IMG/M
Scaffold IDGa0236341_1000001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)229288
Total Scaffold Genes273 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)193 (70.70%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Thermokarst Lakes Summer Vs Winter

Source Dataset Sampling Location
Location NameSAS2a, Kuujjuarapick, Canada
CoordinatesLat. (o)55.1491Long. (o)-77.4866Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003080Metagenome / Metatranscriptome508Y
F009462Metagenome / Metatranscriptome317Y
F015331Metagenome / Metatranscriptome255Y
F015338Metagenome / Metatranscriptome255Y
F024559Metagenome / Metatranscriptome205Y
F037029Metagenome168Y
F063276Metagenome129Y
F066711Metagenome / Metatranscriptome126Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0236341_1000001230F037029N/AMTFRNWCNDKWYEHRDELESYGESLPYTAQEYFAKYKYWLKREYKHQRNDNV
Ga0236341_1000001257F066711AGGAMAKVNRTKWYKFVGDVYELYEQDRNAPPSERTHTDCGWRLRSYKYGGNSTASFKGPLVESLEQRPCPLKSGQPGIYILRDSIFPNGFYIGKGKDISDRIWKHGVKLDGTDKWNKGVGTTEYFAKYRKLRLEKGLTNFDDVEIAFWFTEEFDALEDQLMGAYEAKYGMIPFCNSTEESLFQVWDI
Ga0236341_10000015F015331N/AMDIYADKEYWTSLKWPAAPDDADYSVFESYCTGRVLLLGSTRLLLPLATEAWDLEPKYADPKIKNKDWFNLDTHWDTIIVDGALAFGMEFTHRLLPIVLANCNRFIARAFLNPNWPTKYACYFPKAHELTPQPEEHPINEVYTFYIWNKKQS
Ga0236341_100000152F009462AGGAGMELHESVRDSYKEMVIKESEGFRLTLKKHEVLSPKGLFSIDMLQESLKDGEVVSSQEYNFFMTKEECQALAYGLTA
Ga0236341_100000154F024559GGAGGMINALFKLILGITLIVFVIVVGPLAGIWSLNTLFPVLHIPYTWETWLAFLLLFGSATGLRFGKK
Ga0236341_100000156F070810N/AMSDGFTHMVQVPWHSQSGKWWNEACADVIEVFGLPGDRFTSYAKMESMEFYFKSNRDAELCKILLSDKI
Ga0236341_100000157F063276GGAMQDTSKRQDLDFYLVLVLGFLGMVFAIYWNYTHPHVTVRYDCSIAEISPDYPVQVKEGCRKLRAKYFEENLQKPK
Ga0236341_100000159F003080AGGAGMTTAKDLTDQLINRAKNLQEFIVEREFNEIPLNGVVKFDVQHSKGHPARIFVHALTQQEAEEMVNEWFEEAND
Ga0236341_100000173F015338N/AMALKNGKPNPLNYFDLRRVEFPAPHFKYTSLEKYSPMLAKNLDYWIKTNLNHRYYIGQSIALDSTNTIIYNTRIGFESEKELSFFKIACPHLQMR

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