Scaffold Ga0212123_10014630

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10014630
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9952
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006234	Metagenome / Metatranscriptome	378	Y
F020409	Metagenome / Metatranscriptome	224	Y
F090720	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1001463012	F090720	GGAG	MKVKSLTRAMFLLGIFNTVVRASTVVHDPIHTVLNVAQQVYGQVKQEAQHAEDITKYATMIQKQLQQINQLTNIINQNVEQLRRFGNPDTYVNMLGLDDLFQEVSKMRAGVGRTAADFTEAANGIAALKYTGRGLYQDLSELPDKFGRKVQYETGSLKKFGVVQDMYEDYNNQLSAVNQSFARLEDEVHNTAHQIDTAGSLVETEKLKAKLHAVQGTLDANMQRATLAALKILVQAESNRNDQARAQEVWRQRRTQEMSMEDQELRELGGKLLGPPSGS
Ga0212123_1001463013	F006234	GGAG	MKWSGITTCLLLASCTVGPSIPKGLLTVQGKGSEALTNDGDPLLNTGVDARKVPIEFAKGYTKGVSDQVKRTYWARQDAQKTADENLEGRLHYYNATIPERQDSNGVIRVQREVIIPIVE
Ga0212123_100146303	F020409	N/A	MNYFALFLFAISPLSATAMPPIVRYETNKETFKGPDHTITWKPWQQSPEVDFRFRIGDRYLGHGEWEHYLGFEELPGSVKAIKLSMIHLGNEDVREEVVIRPGSRYAIVKVTNGTMTVHKGVWSWTAQEVNLSSPLFPARSKLANARSD